fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G62100.1 RNLSTDLRLGLSFGSS at 33/172 in AT3G62100.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt016750 KDLSTDLRLGLSISTS in 37/175 AT3G62100.1 1st_1st 0.489285714 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G62100.1     MGRG-RSSSSSSIESSCKSNPFGVSSSNT-----RNLSTDLRLGLSFGSSSGQY-YNGGD
pt016750_POPTR_ MGRGATSSSSSSFES---SNYPSVSSKSSLSQLKKDLSTDLRLGLSISTSQQENPSTPSD
                ****  ******:**   **  .***..:     ::**********:.:*. :   . .*

AT3G62100.1     NHEYDGVGAAEEMMIMEEEEQNECNSVGSFYVKVNMEGVPIGRKIDLLSLNGYHDLITTL
pt016750_POPTR_ QQLSDWPPIKPFLRKALASEENECSS-ATFFVKVYMEGIPIGRKLNLLAHDGYHDLIQTL
                ::  *       :     .*:***.* .:*:*** ***:*****::**: :****** **

AT3G62100.1     DYMFNASILWAEEEDMCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISRAYHY
pt016750_POPTR_ DQMFNTSILWPEMDIEHSGQCHVLTYEDKEGDWLIVGDVPWEMFLPSVRRLKITRADSL
                * ***:****.* :   * :.***** ******::**********.*******:**
BoxShade v3.31 C (beta, 970507) Output
AT3G62100.1     M G R G - R S S S S S S I E S S C K S N P F G V S S S N T - - - - - R N L S T D L R L G L S F G S S S G Q Y - Y N G G D
pt016750_POPTR_    M G R G A T S S S S S S F E S - - - S N Y P S V S S K S S L S Q L K K D L S T D L R L G L S I S T S Q Q E N P S T P S D
 
AT3G62100.1     N H E Y D G V G A A E E M M I M E E E E Q N E C N S V G S F Y V K V N M E G V P I G R K I D L L S L N G Y H D L I T T L
pt016750_POPTR_    Q Q L S D W P P I K P F L R K A L A S E E N E C S S - A T F F V K V Y M E G I P I G R K L N L L A H D G Y H D L I Q T L
 
AT3G62100.1     D Y M F N A S I L W A E E E D M C S E K S H V L T Y A D K E G D W M M V G D V P W E M F L S S V R R L K I S R A Y H Y
pt016750_POPTR_    D Q M F N T S I L W P E M D I E H S G Q C H V L T Y E D K E G D W L I V G D V P W E M F L P S V R R L K I T R A D S L
 
1