fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G62100.1 RNLSTDLRLGLSFGSS at 33/172 in AT3G62100.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt016750 KDLSTDLRLGLSISTS in 37/175 AT3G62100.1 1st_1st 0.489285714 Ia
Pt039254 RDLSTDLRLGLGISTS in 37/174 AT3G62100.1 not_1st 0.464285714 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT3G62100.1     MGRG-RSSSSSSIESSCKSNPFGVSSSNT-----RNLSTDLRLGLSFGSSSGQYYNGGDN
pt039254_POPTR_ MGRGAASSSSSSFES---SRYPSVSGESSFPHVKRDLSTDLRLGLGISTS---------R
pt016750_POPTR_ MGRGATSSSSSSFES---SNYPSVSSKSSLSQLKKDLSTDLRLGLSISTS---------Q
                ****  ******:**   *.  .**...:     ::*********.:.:*         .

AT3G62100.1     HEYDGVGAAEEMMIME----------EEEQNECNSVGSFYVKVNMEGVPIGRKIDLLSLN
pt039254_POPTR_ QDNPSTPS-EQLLDWPPIKPSPGKAVTSEENECCS-STLFVKVYMEGIQIGRKLNLLAHD
pt016750_POPTR_ QENPSTPSDQQLSDWPPIKPFLRKALASEENECSS-ATFFVKVYMEGIPIGRKLNLLAHD
                ::  .. : :::               .*:*** * .:::*** ***: ****::**: :

AT3G62100.1     GYHDLITTLDYMFNASILWAEEEDMCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRL
pt039254_POPTR_ GYHDLIQTLDEMFNTSILWPEMDVEHSGKCHVLTYEDKEGDWLIVGDVPWEVFLPSVRRL
pt016750_POPTR_ GYHDLIQTLDQMFNTSILWPEMDIEHSGQCHVLTYEDKEGDWLIVGDVPWEMFLPSVRRL
                ****** *** ***:****.* :   * :.***** ******::*******:**.*****

AT3G62100.1     KISRAYHY
pt039254_POPTR_ KITRADSL
pt016750_POPTR_ KITRADSL
                **:**
BoxShade v3.31 C (beta, 970507) Output
AT3G62100.1     M G R G - R S S S S S S I E S S C K S N P F G V S S S N T - - - - - R N L S T D L R L G L S F G S S S G Q Y Y N G G D N
pt039254_POPTR_    M G R G A A S S S S S S F E S - - - S R Y P S V S G E S S F P H V K R D L S T D L R L G L G I S T S - - - - - - - - - R
pt016750_POPTR_    M G R G A T S S S S S S F E S - - - S N Y P S V S S K S S L S Q L K K D L S T D L R L G L S I S T S - - - - - - - - - Q
 
AT3G62100.1     H E Y D G V G A A E E M M I M E - - - - - - - - - - E E E Q N E C N S V G S F Y V K V N M E G V P I G R K I D L L S L N
pt039254_POPTR_    Q D N P S T P S - E Q L L D W P P I K P S P G K A V T S E E N E C C S - S T L F V K V Y M E G I Q I G R K L N L L A H D
pt016750_POPTR_    Q E N P S T P S D Q Q L S D W P P I K P F L R K A L A S E E N E C S S - A T F F V K V Y M E G I P I G R K L N L L A H D
 
AT3G62100.1     G Y H D L I T T L D Y M F N A S I L W A E E E D M C S E K S H V L T Y A D K E G D W M M V G D V P W E M F L S S V R R L
pt039254_POPTR_    G Y H D L I Q T L D E M F N T S I L W P E M D V E H S G K C H V L T Y E D K E G D W L I V G D V P W E V F L P S V R R L
pt016750_POPTR_    G Y H D L I Q T L D Q M F N T S I L W P E M D I E H S G Q C H V L T Y E D K E G D W L I V G D V P W E M F L P S V R R L
 
AT3G62100.1     K I S R A Y H Y
pt039254_POPTR_    K I T R A D S L
pt016750_POPTR_    K I T R A D S L
 
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