fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G62100.1 RNLSTDLRLGLSFGSS at 33/172 in AT3G62100.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm002637 DHLRTDLRLGLSISTT in 40/180 AT3G62100.1 not_1st 0.432142857 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G62100.1     MGRGRSSSSSSIESSCKSNPFGVSS--------SNTRNLSTDLRLGLSF---------GS
gm002637_Glyma0 MGKASSSSSSSI-SSCR-NPSNYSTASSLTHQHSDQDHLRTDLRLGLSISTTHDQHVGSS
                **:. ******* ***: ** . *:        *:  :* ********:         .*

AT3G62100.1     SSGQYYNGGDNHEYDGVGAAEEMMIMEEEEQNECNSVGSFYVKVNMEGVPIGRKIDLLSL
gm002637_Glyma0 SSGGHWQPMQPHLSS---------FSQATEVNHCSDHTSFFVKVYMEGIPIGRKLNLLAH
                *** :::  : *  .         : :  * *.*..  **:*** ***:*****::**: 

AT3G62100.1     NGYHDLITTLDYMFNASILWAEEED-MCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVR
gm002637_Glyma0 DGYHELVKTLEQMFDTTILWGTEMDGVQPDRCHVLTYEDGEGDLIMVGDVPWEMFLSAVK
                :***:*:.**: **:::***. * * : .::.***** * *** :************:*:

AT3G62100.1     RLKISRAYHY-
gm002637_Glyma0 RLKITRVETFG
                ****:*.  :
BoxShade v3.31 C (beta, 970507) Output
AT3G62100.1     M G R G R S S S S S S I E S S C K S N P F G V S S - - - - - - - - S N T R N L S T D L R L G L S F - - - - - - - - - G S
gm002637_Glyma0    M G K A S S S S S S S I - S S C R - N P S N Y S T A S S L T H Q H S D Q D H L R T D L R L G L S I S T T H D Q H V G S S
 
AT3G62100.1     S S G Q Y Y N G G D N H E Y D G V G A A E E M M I M E E E E Q N E C N S V G S F Y V K V N M E G V P I G R K I D L L S L
gm002637_Glyma0    S S G G H W Q P M Q P H L S S - - - - - - - - - F S Q A T E V N H C S D H T S F F V K V Y M E G I P I G R K L N L L A H
 
AT3G62100.1     N G Y H D L I T T L D Y M F N A S I L W A E E E D - M C S E K S H V L T Y A D K E G D W M M V G D V P W E M F L S S V R
gm002637_Glyma0    D G Y H E L V K T L E Q M F D T T I L W G T E M D G V Q P D R C H V L T Y E D G E G D L I M V G D V P W E M F L S A V K
 
AT3G62100.1     R L K I S R A Y H Y -
gm002637_Glyma0    R L K I T R V E T F G
 
0