fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT3G62100.1 RNLSTDLRLGLSFGSS at 33/172 in AT3G62100.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm027578 not found in 115aa AT3G62100.1 1st_1st 0.439285714 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT3G62100.1     MGRGRSSSSSSIESSCKSNPFGVSSSNTRNLSTDLRLGLSFGSSSGQYYNGGDNHEYDGV
gm027578_Glyma1 -----------------MQPHLIS---------------SFSQAT---------------
                                  :*. :*               **..::               

AT3G62100.1     GAAEEMMIMEEEEQNECNSVGSFYVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNAS
gm027578_Glyma1 ------------EVNDCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKTLEQMFDTT
                            * *:*..  **:*** ***:*****::**: :***:*:.**: **:::

AT3G62100.1     ILWAEEED-MCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISRAYHY-
gm027578_Glyma1 ILWGTEMDGVQPERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVEAFG
                ***. * * : .*:.***** * *** :************:*:****:*.  :
BoxShade v3.31 C (beta, 970507) Output
AT3G62100.1     M G R G R S S S S S S I E S S C K S N P F G V S S S N T R N L S T D L R L G L S F G S S S G Q Y Y N G G D N H E Y D G V
gm027578_Glyma1    - - - - - - - - - - - - - - - - - M Q P H L I S - - - - - - - - - - - - - - - S F S Q A T - - - - - - - - - - - - - - -
 
AT3G62100.1     G A A E E M M I M E E E E Q N E C N S V G S F Y V K V N M E G V P I G R K I D L L S L N G Y H D L I T T L D Y M F N A S
gm027578_Glyma1    - - - - - - - - - - - - E V N D C S D H T S F F V K V Y M E G I P I G R K L N L L A H D G Y H E L V K T L E Q M F D T T
 
AT3G62100.1     I L W A E E E D - M C S E K S H V L T Y A D K E G D W M M V G D V P W E M F L S S V R R L K I S R A Y H Y -
gm027578_Glyma1    I L W G T E M D G V Q P E R C H V L T Y E D G E G D L I M V G D V P W E M F L S A V K R L K I T R V E A F G
 
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