fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G00180.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt016250 not found in 212aa AT2G45190.1 1st_not 0.593350383 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G00180.1     MSSMSMSSSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNL
pt016250_POPTR_ -----MASSSA-AFSPDHLSSSDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNL
                     *:**** **.***:**:********.*********** **************:**

AT4G00180.1     LSVTVSMRALLLPSVSN--LGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAH
pt016250_POPTR_ FS--VNMRS-LLPAANQFYLGHGFF-----NPQINILEGMRSTGAPPSLMI------NQP
                :*  *.**: ***:..:  ***.*:      *  *:** *** *   .: :      .  

AT4G00180.1     HPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDI
pt016250_POPTR_ NPNES-VMPIRG------VEEIPKPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDI
                :***  **. *.      ::*:*:** .*******************:************

AT4G00180.1     SHREAFSAAAKNWAHFPHIHFGLMADHPPTKKANVRQQEGEDGMMGREGFYGSAANVGVA
pt016250_POPTR_ SHREAFSAAAKNWAHFPHIHFGLMPDQ-PVKKTNVRQQEGEDVLM-KDGFF-APANVGVT
                ************************.*: *.**:********* :* ::**: :.*****:

AT4G00180.1     HN
pt016250_POPTR_ PY
BoxShade v3.31 C (beta, 970507) Output
AT4G00180.1     M S S M S M S S S S A P A F P P D H F S S T D Q L C Y V H C S F C D T V L A V S V P P S S L F K T V T V R C G H C S N L
pt016250_POPTR_    - - - - - M A S S S A - A F S P D H L S S S D Q L C Y V H C N F C D T V L A V S V P C S S L F K T V T V R C G H C T N L
 
AT4G00180.1     L S V T V S M R A L L L P S V S N - - L G H S F L P P P P P P P P P N L L E E M R S G G Q N I N M N M M M S H H A S A H
pt016250_POPTR_    F S - - V N M R S - L L P A A N Q F Y L G H G F F - - - - - N P Q I N I L E G M R S T G A P P S L M I - - - - - - N Q P
 
AT4G00180.1     H P N E H L V M A T R N G R S V D H L Q E M P R P P P A N R P P E K R Q R V P S A Y N R F I K E E I Q R I K A G N P D I
pt016250_POPTR_    N P N E S - V M P I R G - - - - - - V E E I P K P P V V N R P P E K R Q R V P S A Y N R F I K D E I Q R I K A G N P D I
 
AT4G00180.1     S H R E A F S A A A K N W A H F P H I H F G L M A D H P P T K K A N V R Q Q E G E D G M M G R E G F Y G S A A N V G V A
pt016250_POPTR_    S H R E A F S A A A K N W A H F P H I H F G L M P D Q - P V K K T N V R Q Q E G E D V L M - K D G F F - A P A N V G V T
 
AT4G00180.1     H N
pt016250_POPTR_    P Y
 
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