fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G00180.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt010908 MSSSSTLSLDLLPSSE in 6/213 AT2G45190.1 not_not 0.547314578 III
Pt033007 not found in 214aa AT2G45190.1 not_not 0.524296675 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G00180.1     MSSMSMSSSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNL
pt010908_POPTR_ -----MSSSSTLSL--DLLPSSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNL
pt033007_POPTR_ -----MSSSSSLSL--DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNL
                     *****: ::  * :..::*******.:********** :*************:**

AT4G00180.1     LSVTVSMRALLLPSVSN--LGHSFLPPPP-------PPPPPNLLEEMRSGGQNINMNMMM
pt010908_POPTR_ LP--VNMRGLLLPSANQFHLGHSFFSPSHNLL-DEIPNPTPNFL---------INQT---
pt033007_POPTR_ LP--VNMRGLFLPSASQFPLGHNLYSPSHNLLDDQIPNPTPNFL---------INQT---
                *.  *.**.*:***..:  ***.: .*.        * *.**:*         ** .   

AT4G00180.1     SHHASAHHPNEHLV----MATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEE
pt010908_POPTR_ -------NVNDFSVPVRGMA-------DH--ELPRPPVINRPPEKRQRVPSAYNRFIKDE
pt033007_POPTR_ -------HVNDFSVTVRGMA-------DH--ELPRPPVIHRPPEKRQRVPSAYNRFIKDE
                       : *:. *    **       **  *:****  :******************:*

AT4G00180.1     IQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMADHPPTKKANVRQQEGEDGMMGREG
pt010908_POPTR_ IQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDQ-MVKKTNVRQQEGEDVLM-KDG
pt033007_POPTR_ IQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDQ-AMKKNNVRQQEGEDVLI-NDG
                ***********************************.*:   ** ********* :: .:*

AT4G00180.1     FYGSAANVGVAHN-
pt010908_POPTR_ FFSS-ANAGVPTPY
pt033007_POPTR_ FFAS-SNVGVTTPY
                *:.* :*.**.
BoxShade v3.31 C (beta, 970507) Output
AT4G00180.1     M S S M S M S S S S A P A F P P D H F S S T D Q L C Y V H C S F C D T V L A V S V P P S S L F K T V T V R C G H C S N L
pt010908_POPTR_    - - - - - M S S S S T L S L - - D L L P S S E Q L C Y V H C N I C D T V L A V S V P C T S L F K T V T V R C G H C T N L
pt033007_POPTR_    - - - - - M S S S S S L S L - - D H L P P S E Q L C Y V H C N I C D T V L A V S V P C T S L F K T V T V R C G H C T N L
 
AT4G00180.1     L S V T V S M R A L L L P S V S N - - L G H S F L P P P P - - - - - - - P P P P P N L L E E M R S G G Q N I N M N M M M
pt010908_POPTR_    L P - - V N M R G L L L P S A N Q F H L G H S F F S P S H N L L - D E I P N P T P N F L - - - - - - - - - I N Q T - - -
pt033007_POPTR_    L P - - V N M R G L F L P S A S Q F P L G H N L Y S P S H N L L D D Q I P N P T P N F L - - - - - - - - - I N Q T - - -
 
AT4G00180.1     S H H A S A H H P N E H L V - - - - M A T R N G R S V D H L Q E M P R P P P A N R P P E K R Q R V P S A Y N R F I K E E
pt010908_POPTR_    - - - - - - - N V N D F S V P V R G M A - - - - - - - D H - - E L P R P P V I N R P P E K R Q R V P S A Y N R F I K D E
pt033007_POPTR_    - - - - - - - H V N D F S V T V R G M A - - - - - - - D H - - E L P R P P V I H R P P E K R Q R V P S A Y N R F I K D E
 
AT4G00180.1     I Q R I K A G N P D I S H R E A F S A A A K N W A H F P H I H F G L M A D H P P T K K A N V R Q Q E G E D G M M G R E G
pt010908_POPTR_    I Q R I K A G N P D I S H R E A F S A A A K N W A H F P H I H F G L M P D Q - M V K K T N V R Q Q E G E D V L M - K D G
pt033007_POPTR_    I Q R I K A G N P D I S H R E A F S A A A K N W A H F P H I H F G L M P D Q - A M K K N N V R Q Q E G E D V L I - N D G
 
AT4G00180.1     F Y G S A A N V G V A H N -
pt010908_POPTR_    F F S S - A N A G V P T P Y
pt033007_POPTR_    F F A S - S N V G V T T P Y
 
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