fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G00180.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt016250 not found in 212aa AT2G45190.1 1st_not 0.593350383 II
Pt010908 MSSSSTLSLDLLPSSE in 6/213 AT2G45190.1 not_not 0.547314578 III
Pt033007 not found in 214aa AT2G45190.1 not_not 0.524296675 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G00180.1     MSSMSMSSSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNL
pt016250_POPTR_ ------MASSSAAFSPDHLSSSDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNL
pt010908_POPTR_ -------MSSSSTLSLDLLPSSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNL
pt033007_POPTR_ -------MSSSSSLSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNL
                        **:.::. * :..::*******.:********** :*************:**

AT4G00180.1     LSVTVSMRALLLPSVSN--LGHSFLPPP--------PPPPPPNLLEEMRSGGQNINMNMM
pt016250_POPTR_ FS--VNMRSL-LPAANQFYLGHGFFNPQINILEGMRSTGAPPSLM---------INQP--
pt010908_POPTR_ LP--VNMRGLLLPSANQFHLGHSFFSPSHNLL--DEIPNPTPNFL---------INQT--
pt033007_POPTR_ LP--VNMRGLFLPSASQFPLGHNLYSPSHNLLD-DQIPNPTPNFL---------INQT--
                :.  *.**.* **:..:  ***.:  *          . ..*.::         **    

AT4G00180.1     MSHHASAHHPNEHLVMATRNGRSV-DHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQ
pt016250_POPTR_ --------NPNESVMPI----RGV--E--EIPKPPVVNRPPEKRQRVPSAYNRFIKDEIQ
pt010908_POPTR_ --------NVNDFSVPV----RGMADH--ELPRPPVINRPPEKRQRVPSAYNRFIKDEIQ
pt033007_POPTR_ --------HVNDFSVTV----RGMADH--ELPRPPVIHRPPEKRQRVPSAYNRFIKDEIQ
                        : *:  :      *.:  .  *:*:**  :******************:***

AT4G00180.1     RIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMADHPPTKKANVRQQEGEDGMMGREGFY
pt016250_POPTR_ RIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDQ-PVKKTNVRQQEGEDVLM-KDGFF
pt010908_POPTR_ RIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDQ-MVKKTNVRQQEGEDVLM-KDGFF
pt033007_POPTR_ RIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDQ-AMKKNNVRQQEGEDVLI-NDGFF
                *********************************.*:   ** ********* :: .:**:

AT4G00180.1     GSAANVGVAHN-
pt016250_POPTR_ -APANVGV-TPY
pt010908_POPTR_ -SSANAGVPTPY
pt033007_POPTR_ -ASSNVGVTTPY
                 :.:*.**
BoxShade v3.31 C (beta, 970507) Output
AT4G00180.1     M S S M S M S S S S A P A F P P D H F S S T D Q L C Y V H C S F C D T V L A V S V P P S S L F K T V T V R C G H C S N L
pt016250_POPTR_    - - - - - - M A S S S A A F S P D H L S S S D Q L C Y V H C N F C D T V L A V S V P C S S L F K T V T V R C G H C T N L
pt010908_POPTR_    - - - - - - - M S S S S T L S L D L L P S S E Q L C Y V H C N I C D T V L A V S V P C T S L F K T V T V R C G H C T N L
pt033007_POPTR_    - - - - - - - M S S S S S L S L D H L P P S E Q L C Y V H C N I C D T V L A V S V P C T S L F K T V T V R C G H C T N L
 
AT4G00180.1     L S V T V S M R A L L L P S V S N - - L G H S F L P P P - - - - - - - - P P P P P P N L L E E M R S G G Q N I N M N M M
pt016250_POPTR_    F S - - V N M R S L - L P A A N Q F Y L G H G F F N P Q I N I L E G M R S T G A P P S L M - - - - - - - - - I N Q P - -
pt010908_POPTR_    L P - - V N M R G L L L P S A N Q F H L G H S F F S P S H N L L - - D E I P N P T P N F L - - - - - - - - - I N Q T - -
pt033007_POPTR_    L P - - V N M R G L F L P S A S Q F P L G H N L Y S P S H N L L D - D Q I P N P T P N F L - - - - - - - - - I N Q T - -
 
AT4G00180.1     M S H H A S A H H P N E H L V M A T R N G R S V - D H L Q E M P R P P P A N R P P E K R Q R V P S A Y N R F I K E E I Q
pt016250_POPTR_    - - - - - - - - N P N E S V M P I - - - - R G V - - E - - E I P K P P V V N R P P E K R Q R V P S A Y N R F I K D E I Q
pt010908_POPTR_    - - - - - - - - N V N D F S V P V - - - - R G M A D H - - E L P R P P V I N R P P E K R Q R V P S A Y N R F I K D E I Q
pt033007_POPTR_    - - - - - - - - H V N D F S V T V - - - - R G M A D H - - E L P R P P V I H R P P E K R Q R V P S A Y N R F I K D E I Q
 
AT4G00180.1     R I K A G N P D I S H R E A F S A A A K N W A H F P H I H F G L M A D H P P T K K A N V R Q Q E G E D G M M G R E G F Y
pt016250_POPTR_    R I K A G N P D I S H R E A F S A A A K N W A H F P H I H F G L M P D Q - P V K K T N V R Q Q E G E D V L M - K D G F F
pt010908_POPTR_    R I K A G N P D I S H R E A F S A A A K N W A H F P H I H F G L M P D Q - M V K K T N V R Q Q E G E D V L M - K D G F F
pt033007_POPTR_    R I K A G N P D I S H R E A F S A A A K N W A H F P H I H F G L M P D Q - A M K K N N V R Q Q E G E D V L I - N D G F F
 
AT4G00180.1     G S A A N V G V A H N -
pt016250_POPTR_    - A P A N V G V - T P Y
pt010908_POPTR_    - S S A N A G V P T P Y
pt033007_POPTR_    - A S S N V G V T T P Y
 
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