fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G00180.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm001387 not found in 215aa AT2G45190.1 1st_not 0.598465473 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G00180.1     MSSMSMSSSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNL
gm001387_Glyma0 -----MSSSSTSFSPDQHLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNL
                     *****:.  * :*:*.:********.*********** :*************:**

AT4G00180.1     LSVTVSMRALLLPSVS--NLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAH
gm001387_Glyma0 LS--VNMRGLLLPSANQLHLGHSFF------TPQNLLEEIRNAP---STNMMMNQLPN--
                **  *.**.*****..  :*****:      .* *****:*..    . ****.: ..  

AT4G00180.1     HPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDI
gm001387_Glyma0 -PND-LVMSTMRGGP----EETPKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDI
                 **: ***:* .* .    :* *:**.********************:************

AT4G00180.1     SHREAFSAAAKNWAHFPHIHFGLMADHPPTKKANVRQQEGEDGMMGREGFYGSAANVGVA
gm001387_Glyma0 SHREAFSAAAKNWAHFPHIHFGLMPDNQPVKKANVR-QEAEDVLM-KDGFF-APANVGVS
                ************************.*: *.****** **.** :* ::**: :.*****:

AT4G00180.1     HN
gm001387_Glyma0 PY
BoxShade v3.31 C (beta, 970507) Output
AT4G00180.1     M S S M S M S S S S A P A F P P D H F S S T D Q L C Y V H C S F C D T V L A V S V P P S S L F K T V T V R C G H C S N L
gm001387_Glyma0    - - - - - M S S S S T S F S P D Q H L S P S D Q L C Y V H C N F C D T V L A V S V P C T S L F K T V T V R C G H C T N L
 
AT4G00180.1     L S V T V S M R A L L L P S V S - - N L G H S F L P P P P P P P P P N L L E E M R S G G Q N I N M N M M M S H H A S A H
gm001387_Glyma0    L S - - V N M R G L L L P S A N Q L H L G H S F F - - - - - - T P Q N L L E E I R N A P - - - S T N M M M N Q L P N - -
 
AT4G00180.1     H P N E H L V M A T R N G R S V D H L Q E M P R P P P A N R P P E K R Q R V P S A Y N R F I K E E I Q R I K A G N P D I
gm001387_Glyma0    - P N D - L V M S T M R G G P - - - - E E T P K P P S A N R P P E K R Q R V P S A Y N R F I K D E I Q R I K A G N P D I
 
AT4G00180.1     S H R E A F S A A A K N W A H F P H I H F G L M A D H P P T K K A N V R Q Q E G E D G M M G R E G F Y G S A A N V G V A
gm001387_Glyma0    S H R E A F S A A A K N W A H F P H I H F G L M P D N Q P V K K A N V R - Q E A E D V L M - K D G F F - A P A N V G V S
 
AT4G00180.1     H N
gm001387_Glyma0    P Y
 
0