fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G00200.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt016418 not found in 324aa AT4G12080.1 not_not 0.458984375 III
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G00200.1     METSDRISPG-GGIGAEVPSAYHMAPRPSDSPANQFMGLSLPPMEAPMPSSGEASG---K
pt016418_POPTR_ MEGREGLSSGVTVIGAEAPSTYHMAPR-TENPGQ--IVVSPPAVEVPPVGAGLIGGTAEK
                **  : :*.*   ****.**:****** ::.*.:  : :* *.:*.*  .:*  .*   *

AT4G00200.1     KRRGRPRKYEANGA------PLP-SSSVPLVKKRVR----GKL-NGFDMKKMHKTIGFHS
pt016418_POPTR_ KKRGRPRKYGPDGAVARALSPMPISASAPHTGGDYSAGKPGKVWPGSYEKKKYKKMGMEN
                *:******* .:**      *:* *:*.* .         **:  *   ** :*.:*:..

AT4G00200.1     SGERFGVGGGVGGGVGSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVISNVT
pt016418_POPTR_ LGE------WAANSVGTNFTPHVITVNAGEDVTMKVISFSQQGPRAICILSANGVISNVT
                 **       ....**:**********:***:**::************************

AT4G00200.1     LRQPDSCGGTLTYEGRFEILSLSGSFMETENQGSKGRSGGMSVSLAGPDGRVVGGGVAGL
pt016418_POPTR_ LRQPDSSGGTLTYEGRFEILSLSGSFMPTEIQGTRSRSGGMSVSLASPDGRVVGGSVAGL
                ******.******************** ** **::.**********.********.****

AT4G00200.1     LIAATPIQVVVGSFITSDQQDHQKPRKQRVEHAPAAVMSVPPPPSPPPPAASVFSPTNPD
pt016418_POPTR_ LVAASPVQVVVGSFLPGNHQE-QKPKKPKIDSIPATF--APAPAIPASIAEREESAGTPQ
                *:**:*:*******:..::*: ***:* :::  **:.  .*.*. *.. *    *. .*:

AT4G00200.1     REQPPSSFGISSWTNGQDMP--RNSATDINISLPVD
pt016418_POPTR_ GQQNSSPFQRENWATMHSMQDVRNSGTDINISLPEG
                 :* .*.*  ..*:. :.*   ***.******** .
BoxShade v3.31 C (beta, 970507) Output
AT4G00200.1     M E T S D R I S P G - G G I G A E V P S A Y H M A P R P S D S P A N Q F M G L S L P P M E A P M P S S G E A S G - - - K
pt016418_POPTR_    M E G R E G L S S G V T V I G A E A P S T Y H M A P R - T E N P G Q - - I V V S P P A V E V P P V G A G L I G G T A E K
 
AT4G00200.1     K R R G R P R K Y E A N G A - - - - - - P L P - S S S V P L V K K R V R - - - - G K L - N G F D M K K M H K T I G F H S
pt016418_POPTR_    K K R G R P R K Y G P D G A V A R A L S P M P I S A S A P H T G G D Y S A G K P G K V W P G S Y E K K K Y K K M G M E N
 
AT4G00200.1     S G E R F G V G G G V G G G V G S N F T P H V I T V N T G E D I T M R I I S F S Q Q G P R A I C I L S A N G V I S N V T
pt016418_POPTR_    L G E - - - - - - W A A N S V G T N F T P H V I T V N A G E D V T M K V I S F S Q Q G P R A I C I L S A N G V I S N V T
 
AT4G00200.1     L R Q P D S C G G T L T Y E G R F E I L S L S G S F M E T E N Q G S K G R S G G M S V S L A G P D G R V V G G G V A G L
pt016418_POPTR_    L R Q P D S S G G T L T Y E G R F E I L S L S G S F M P T E I Q G T R S R S G G M S V S L A S P D G R V V G G S V A G L
 
AT4G00200.1     L I A A T P I Q V V V G S F I T S D Q Q D H Q K P R K Q R V E H A P A A V M S V P P P P S P P P P A A S V F S P T N P D
pt016418_POPTR_    L V A A S P V Q V V V G S F L P G N H Q E - Q K P K K P K I D S I P A T F - - A P A P A I P A S I A E R E E S A G T P Q
 
AT4G00200.1     R E Q P P S S F G I S S W T N G Q D M P - - R N S A T D I N I S L P V D
pt016418_POPTR_    G Q Q N S S P F Q R E N W A T M H S M Q D V R N S G T D I N I S L P E G
 
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