fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G01060.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt026754 not found in 95aa AT5G53200.1 1st_not 0.727272727 II
Pt016529 not found in 88aa AT2G46410.1 not_not 0.659090909 III
Pt039931 not found in 92aa AT5G53200.1 not_not 0.659090909 III
Pt023384 not found in 97aa AT5G53200.1 not_not 0.651515151 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G01060.1     ---MD--NHRRTKQPKTNSIVTSSSEGTEVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWE
pt039931_POPTR_ ---MD---RRRRKQAKTTT---HCSD-QEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWA
pt016529_POPTR_ ---MD---RRRKKQAKTTS---CCSE-QEVSSIEWEFINMSEQEEDLIYRMHNLVGDRWA
pt026754_POPTR_ MESMN--RRRRRKQPKINS---SESE--EVSSIEWEFINMSEQEEDLIYRMHRLVGERWD
pt023384_POPTR_ MESMDRRRRRRRKQAKINN---SESE--EVSSIEWEFIDMSEQEEDLIYRMYRLVGERWD
                   *:   :** **.* ..     *:  ****:***.::**::****: **:.***:** 

AT4G01060.1     LIAGRIPGRTAGEIERFWVMKN--------------------
pt039931_POPTR_ LIAGRIPGRKAEEIERYWIMRHCEGFASRRKEQKRDVIPNTS
pt016529_POPTR_ LIAGRIPGRKAEEIERFWLMRHGEGFASRRREQKRCHS----
pt026754_POPTR_ LIAGRIPGRKAEEIERFWIMKHREGFAENGKLYNEVKSRTSS
pt023384_POPTR_ LIAGRIPGRKAEEIERFWIMKHREGFAEKRRLHSKAKSKTYR
                *********.* ****:*:*::
BoxShade v3.31 C (beta, 970507) Output
AT4G01060.1     - - - M D - - N H R R T K Q P K T N S I V T S S S E G T E V S S L E W E V V N M S Q E E E D L V S R M H K L V G D R W E
pt039931_POPTR_    - - - M D - - - R R R R K Q A K T T T - - - H C S D - Q E V S S I E W E F I N M S E Q E E D L I Y R M Y K L V G D R W A
pt016529_POPTR_    - - - M D - - - R R R K K Q A K T T S - - - C C S E - Q E V S S I E W E F I N M S E Q E E D L I Y R M H N L V G D R W A
pt026754_POPTR_    M E S M N - - R R R R R K Q P K I N S - - - S E S E - - E V S S I E W E F I N M S E Q E E D L I Y R M H R L V G E R W D
pt023384_POPTR_    M E S M D R R R R R R R K Q A K I N N - - - S E S E - - E V S S I E W E F I D M S E Q E E D L I Y R M Y R L V G E R W D
 
AT4G01060.1     L I A G R I P G R T A G E I E R F W V M K N - - - - - - - - - - - - - - - - - - - -
pt039931_POPTR_    L I A G R I P G R K A E E I E R Y W I M R H C E G F A S R R K E Q K R D V I P N T S
pt016529_POPTR_    L I A G R I P G R K A E E I E R F W L M R H G E G F A S R R R E Q K R C H S - - - -
pt026754_POPTR_    L I A G R I P G R K A E E I E R F W I M K H R E G F A E N G K L Y N E V K S R T S S
pt023384_POPTR_    L I A G R I P G R K A E E I E R F W I M K H R E G F A E K R R L H S K A K S K T Y R
 
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