fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G12350.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt010820 not found in 270aa AT4G12350.1 not_1st 0.526956521 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G12350.1     MGRQPCCDKLMVKKGPWTAEEDKKLINFILTNGHCCWRALPKLAGLRRCGKSCRLRWTNY
pt010820_POPTR_ MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNY
                ********** **********************:*****:********************

AT4G12350.1     LRPDLKRGLLSDAEEQLVIDLHALLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKME
pt010820_POPTR_ LRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKRG
                **********::*********** **********************************  

AT4G12350.1     IDPSTHQPLNKVFTDTNLVDKSETSSKAD----NVNDNKIVEIDGTTTNTIDDSIITHQN
pt010820_POPTR_ IDPVTHEPLHK-----EAKPEESSSSPADLLPESSNNNDMQEKDGIVINSDDNSRSPTEN
                *** **:**:*     :   :..:** **    . *:*.: * ** . *: *:*  . :*

AT4G12350.1     SSNDDYELLGDIIHNYGDLFNILWTNDEPPLVDDASWSNHNVGIGGTAAVAASDKNNTAA
pt010820_POPTR_ SCSTEDSLLLDSICNDEMLLNSLWM-DEPPLV-DASWNK-------IIPLAAENTNN---
                *.. : .** * * *   *:* **  ****** ****.:         .:**.:.**   

AT4G12350.1     EEDFPERSFEKQNGESWMFLDYCQEFGVEDFGFECYHGFGQSSMKTGHKD---
pt010820_POPTR_ --DMGYPSWE----DNYTGLSDCQDFGVHDFGFDCFDTIELSALNILEMELNR
                  *:   *:*    :.:  *. **:***.****:*:. :  *:::  . :
BoxShade v3.31 C (beta, 970507) Output
AT4G12350.1     M G R Q P C C D K L M V K K G P W T A E E D K K L I N F I L T N G H C C W R A L P K L A G L R R C G K S C R L R W T N Y
pt010820_POPTR_    M G R Q P C C D K L G V K K G P W T A E E D K K L I N F I L T N G Q C C W R A V P K L A G L R R C G K S C R L R W T N Y
 
AT4G12350.1     L R P D L K R G L L S D A E E Q L V I D L H A L L G N R W S K I A A R L P G R T D N E I K N H W N T H I K K K L L K M E
pt010820_POPTR_    L R P D L K R G L L T E A E E Q L V I D L H A R L G N R W S K I A A R L P G R T D N E I K N H W N T H I K K K L L K R G
 
AT4G12350.1     I D P S T H Q P L N K V F T D T N L V D K S E T S S K A D - - - - N V N D N K I V E I D G T T T N T I D D S I I T H Q N
pt010820_POPTR_    I D P V T H E P L H K - - - - - E A K P E E S S S S P A D L L P E S S N N N D M Q E K D G I V I N S D D N S R S P T E N
 
AT4G12350.1     S S N D D Y E L L G D I I H N Y G D L F N I L W T N D E P P L V D D A S W S N H N V G I G G T A A V A A S D K N N T A A
pt010820_POPTR_    S C S T E D S L L L D S I C N D E M L L N S L W M - D E P P L V - D A S W N K - - - - - - - I I P L A A E N T N N - - -
 
AT4G12350.1     E E D F P E R S F E K Q N G E S W M F L D Y C Q E F G V E D F G F E C Y H G F G Q S S M K T G H K D - - -
pt010820_POPTR_    - - D M G Y P S W E - - - - D N Y T G L S D C Q D F G V H D F G F D C F D T I E L S A L N I L E M E L N R
 
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