fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G12850.2 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm049442 not found in 115aa AT4G12850.1 1st_not 0.533582089 II
Pt040151 not found in 195aa AT4G12850.1 1st_not 0.555970149 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G12850.2     MMTGDLKLD----------EPYVGLKFESEEEAKDFYVEYSKRLGFVVRMMQRRRSGIDG
gm049442_Glyma1 ------------------------MEFGSEEDARKFYVDYARRVGFVVRIMQRRRSGIDG
pt040151_POPTR_ -------MDVEEEEEAGIVEPCVGMEFESEDAARKFYSEYARRLGFVVRVMQRRRSGIDG
                                        ::* **: *:.** :*::*:*****:**********

AT4G12850.2     RTLARRLGCNKQGFGPNN------QRSSSSSSSSREGCKATILVKMEKSGKWVVTRFIKE
gm049442_Glyma1 RTLARRLGCNKQGFSPNNKGIL--GPEKKPRPSAREGCKATILVKFEKSGKWIVTRFVKD
pt040151_POPTR_ RTLARRLGCNKQGFSPNNRTIVGPGPDKKPRPSAREGCKATILVKMDKSGKWVVTRFEKD
                **************.***        .... .*:***********::*****:**** *:

AT4G12850.2     HNHSLQFIGSSSYDSF----------------------------VRF--------QSLYL
gm049442_Glyma1 HNHPL-IATANGFSTA----------------------------VSF-------------
pt040151_POPTR_ HNHPL-VVTASGFSSSGDKDKKIEELTKELEHQDHLCATYREKLVSFMNSIEEQTEELAS
                ***.* .  :..:.:                             * *             

AT4G12850.2     WVFLICFAIT-------------
gm049442_Glyma1 ---LLV-----------------
pt040151_POPTR_ KIQLIVDNVRKVESEVQNFSRRR
                   *:
BoxShade v3.31 C (beta, 970507) Output
AT4G12850.2     M M T G D L K L D - - - - - - - - - - E P Y V G L K F E S E E E A K D F Y V E Y S K R L G F V V R M M Q R R R S G I D G
gm049442_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - M E F G S E E D A R K F Y V D Y A R R V G F V V R I M Q R R R S G I D G
pt040151_POPTR_    - - - - - - - M D V E E E E E A G I V E P C V G M E F E S E D A A R K F Y S E Y A R R L G F V V R V M Q R R R S G I D G
 
AT4G12850.2     R T L A R R L G C N K Q G F G P N N - - - - - - Q R S S S S S S S S R E G C K A T I L V K M E K S G K W V V T R F I K E
gm049442_Glyma1    R T L A R R L G C N K Q G F S P N N K G I L - - G P E K K P R P S A R E G C K A T I L V K F E K S G K W I V T R F V K D
pt040151_POPTR_    R T L A R R L G C N K Q G F S P N N R T I V G P G P D K K P R P S A R E G C K A T I L V K M D K S G K W V V T R F E K D
 
AT4G12850.2     H N H S L Q F I G S S S Y D S F - - - - - - - - - - - - - - - - - - - - - - - - - - - - V R F - - - - - - - - Q S L Y L
gm049442_Glyma1    H N H P L - I A T A N G F S T A - - - - - - - - - - - - - - - - - - - - - - - - - - - - V S F - - - - - - - - - - - - -
pt040151_POPTR_    H N H P L - V V T A S G F S S S G D K D K K I E E L T K E L E H Q D H L C A T Y R E K L V S F M N S I E E Q T E E L A S
 
AT4G12850.2     W V F L I C F A I T - - - - - - - - - - - - -
gm049442_Glyma1    - - - L L V - - - - - - - - - - - - - - - - -
pt040151_POPTR_    K I Q L I V D N V R K V E S E V Q N F S R R R
 
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