fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G12850.2 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm049442 not found in 115aa AT4G12850.1 1st_not 0.533582089 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G12850.2     MMTGDLKLDEPYVGLKFESEEEAKDFYVEYSKRLGFVVRMMQRRRSGIDGRTLARRLGCN
gm049442_Glyma1 --------------MEFGSEEDARKFYVDYARRVGFVVRIMQRRRSGIDGRTLARRLGCN
                              ::* ***:*:.***:*::*:*****:********************

AT4G12850.2     KQGFGPNNQ----RSSSSSSSSREGCKATILVKMEKSGKWVVTRFIKEHNHSLQFIGSSS
gm049442_Glyma1 KQGFSPNNKGILGPEKKPRPSAREGCKATILVKFEKSGKWIVTRFVKDHNHPL-IATANG
                ****.***:     .... .*:***********:******:****:*:***.* :  :..

AT4G12850.2     YDSFVRFQSLYLWVFLICFAIT
gm049442_Glyma1 FSTAVSF-------LLV-----
                :.: * *       :*:
BoxShade v3.31 C (beta, 970507) Output
AT4G12850.2     M M T G D L K L D E P Y V G L K F E S E E E A K D F Y V E Y S K R L G F V V R M M Q R R R S G I D G R T L A R R L G C N
gm049442_Glyma1    - - - - - - - - - - - - - - M E F G S E E D A R K F Y V D Y A R R V G F V V R I M Q R R R S G I D G R T L A R R L G C N
 
AT4G12850.2     K Q G F G P N N Q - - - - R S S S S S S S S R E G C K A T I L V K M E K S G K W V V T R F I K E H N H S L Q F I G S S S
gm049442_Glyma1    K Q G F S P N N K G I L G P E K K P R P S A R E G C K A T I L V K F E K S G K W I V T R F V K D H N H P L - I A T A N G
 
AT4G12850.2     Y D S F V R F Q S L Y L W V F L I C F A I T
gm049442_Glyma1    F S T A V S F - - - - - - - L L V - - - - -
 
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