fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G14550.1 NLKETELCLGLPGGTE at 6/228 in AT4G14550.1
FSETVDLKLNLQSNKQ at 37/228 in AT4G14550.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt042254 NYKETELCLGLPGAVG in 19/248 AT4G14550.1 1st_1st 0.741935483 Ia
FAETVDLKLNLQAKEG in 51/248
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G14550.1     ------------MNLKETELCLGLPGGT---ETVESPAKSGVGNKRGFSETVDLKLNLQS
pt042254_POPTR_ MTTSVLGTERTDLNYKETELCLGLPGAVGAKNEVETPNKA--TGKRGFAETVDLKLNLQA
                            :* ***********..   : **:* *:   .****:**********:

AT4G14550.1     NKQGHVDLN---TNGAPKEKTFL-----KDPSKPPAKAQVVGWPPVRNYRKNVMANQKSG
pt042254_POPTR_ -KEGVMDLNENIKNITSKDKNHLPAVTIKDPAKPPAKAQVVGWPPVRSYRKNVMAQKNAS
                 *:* :***   .* :.*:*..*     ***:***************.*******::::.

AT4G14550.1     EAEEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQG
pt042254_POPTR_ EEGEKASTGGSSAAFVKVCMDGAPYLRKVDLKMYRSYQELSDALAKMFSSFTMGNYGAQG
                *  *  *:**.:.*****.*************** **::***************.*****

AT4G14550.1     MIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLA
pt042254_POPTR_ MIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVNSCKRLRIMKGSEAIGLA
                *********:**************************** ***:*****************

AT4G14550.1     PRAMEKFKNRS
pt042254_POPTR_ PRAMEKCKSRT
                ****** *.*:
BoxShade v3.31 C (beta, 970507) Output
AT4G14550.1     - - - - - - - - - - - - M N L K E T E L C L G L P G G T - - - E T V E S P A K S G V G N K R G F S E T V D L K L N L Q S
pt042254_POPTR_    M T T S V L G T E R T D L N Y K E T E L C L G L P G A V G A K N E V E T P N K A - - T G K R G F A E T V D L K L N L Q A
 
AT4G14550.1     N K Q G H V D L N - - - T N G A P K E K T F L - - - - - K D P S K P P A K A Q V V G W P P V R N Y R K N V M A N Q K S G
pt042254_POPTR_    - K E G V M D L N E N I K N I T S K D K N H L P A V T I K D P A K P P A K A Q V V G W P P V R S Y R K N V M A Q K N A S
 
AT4G14550.1     E A E E A M S S G G G T V A F V K V S M D G A P Y L R K V D L K M Y T S Y K D L S D A L A K M F S S F T M G S Y G A Q G
pt042254_POPTR_    E E G E K A S T G G S S A A F V K V C M D G A P Y L R K V D L K M Y R S Y Q E L S D A L A K M F S S F T M G N Y G A Q G
 
AT4G14550.1     M I D F M N E S K V M D L L N S S E Y V P S Y E D K D G D W M L V G D V P W P M F V E S C K R L R I M K G S E A I G L A
pt042254_POPTR_    M I D F M N E S K L M D L L N S S E Y V P S Y E D K D G D W M L V G D V P W E M F V N S C K R L R I M K G S E A I G L A
 
AT4G14550.1     P R A M E K F K N R S
pt042254_POPTR_    P R A M E K C K S R T
 
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