fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G14550.1 NLKETELCLGLPGGTE at 6/228 in AT4G14550.1
FSETVDLKLNLQSNKQ at 37/228 in AT4G14550.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm028045 LTNEHGLSLNLKETEL in 10/239 AT3G23050.1 1st_not 0.783410138 II
FSETVDLKLNLQTKED in 47/239
Gm055369 NLKETELCLGLPGGGG in 76/306 AT4G14550.1 not_1st 0.764976958 II
FSETVDLKLNLHSKED in 115/306
Gm007181 GFEETELRLGLPGNVG in 17/254 AT4G14550.1 not_1st 0.629032258 II
SATTVDLMLNLSSKEA in 58/254
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G14550.1     ------------------------------------------------------------
gm028045_Glyma1 -----------------------------------------------------------M
gm055369_Glyma2 MTAKQTKQHYNRKRTQSEREGSYSHKEKNFQRGESKRVLLFLFYIYLGAKLCEFIDKPEM
gm007181_Glyma0 -----------------------------------------------------------M
                                                                            

AT4G14550.1     -----------MNLKETELCLGLP-----------GGTETVESPAKSGVGNKRGFSE---
gm028045_Glyma1 TTMLTNEHGLSLNLKETELCLGLP-----------GGGSEVETPRATG---KRGFSE---
gm055369_Glyma2 ATMLTKEHG--LNLKETELCLGLPGGGGGGGGGGGGGGGEVETPRATG---KRGFSE---
gm007181_Glyma0 EVGLNKKEN--MGFEETELRLGLP--------GNVGGTGTEEVLIR-----KRGFSETET
                           :.::**** ****           **    *         ******   

AT4G14550.1     ---------TVDLKLNLQSNKQ-GHVDLNTN--GAPKEKTFL-KDPSKPPAKAQVVGWPP
gm028045_Glyma1 ---------TVDLKLNLQTKE-----DLNENLKNVSKEKTLL-KDPAKPPAKAQVVGWPP
gm055369_Glyma2 ---------TVDLKLNLHSKE-----DLNENLKNVSKEKTLL-KDPAKPPAKAQVVGWPP
gm007181_Glyma0 ETEEDESATTVDLMLNLSSKEAAAAADPTDKHKTLPKEKTLLPADPAKPPAKAQVVGWPP
                         **** *** :::     * . :    .****:*  **:*************

AT4G14550.1     VRNYRKNVMANQK-SGE--AEEAMSSG-GGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLS
gm028045_Glyma1 VRSYRKNMMAVQKVSNEEVAEKTTSSTIANSGAFVKVSMDGAPYLRKVDLTMYKSYKDLS
gm055369_Glyma2 VRSYRKNMMAVQKVSTEDVAEKTTSST-ANPGAFVKVSMDGAPYLRKVDLTMYKSYKELS
gm007181_Glyma0 VRSFRKNMLAVQKSVGEE-NEKNSSSP---NASFVKVSMDGAPYLRKVDLKMYKSYRELS
                **.:***::* **   *   *:  **      :*****************.**.**::**

AT4G14550.1     DALAKMFSSFTMGSYGAQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMF
gm028045_Glyma1 DALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMF
gm055369_Glyma2 DALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMF
gm007181_Glyma0 DSLGKMFSSFTIGNCESQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMF
                *:*.*******:*.  :*** *******: ******:***:**************** **

AT4G14550.1     VESCKRLRIMKGSEAI--GLAPRAMEKFKNRS
gm028045_Glyma1 VGSCKRLRIMKGSEAI--GLAPRAMEKCKSRS
gm055369_Glyma2 VESCKRLRIMKGSEAI--GLAPRAMEKCKSRS
gm007181_Glyma0 VESCKRLRIMKGKEAIGLGLAPRAMAKSKNRS
                * **********.***  ******* * *.**
BoxShade v3.31 C (beta, 970507) Output
AT4G14550.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm028045_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M
gm055369_Glyma2    M T A K Q T K Q H Y N R K R T Q S E R E G S Y S H K E K N F Q R G E S K R V L L F L F Y I Y L G A K L C E F I D K P E M
gm007181_Glyma0    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M
 
AT4G14550.1     - - - - - - - - - - - M N L K E T E L C L G L P - - - - - - - - - - - G G T E T V E S P A K S G V G N K R G F S E - - -
gm028045_Glyma1    T T M L T N E H G L S L N L K E T E L C L G L P - - - - - - - - - - - G G G S E V E T P R A T G - - - K R G F S E - - -
gm055369_Glyma2    A T M L T K E H G - - L N L K E T E L C L G L P G G G G G G G G G G G G G G G E V E T P R A T G - - - K R G F S E - - -
gm007181_Glyma0    E V G L N K K E N - - M G F E E T E L R L G L P - - - - - - - - G N V G G T G T E E V L I R - - - - - K R G F S E T E T
 
AT4G14550.1     - - - - - - - - - T V D L K L N L Q S N K Q - G H V D L N T N - - G A P K E K T F L - K D P S K P P A K A Q V V G W P P
gm028045_Glyma1    - - - - - - - - - T V D L K L N L Q T K E - - - - - D L N E N L K N V S K E K T L L - K D P A K P P A K A Q V V G W P P
gm055369_Glyma2    - - - - - - - - - T V D L K L N L H S K E - - - - - D L N E N L K N V S K E K T L L - K D P A K P P A K A Q V V G W P P
gm007181_Glyma0    E T E E D E S A T T V D L M L N L S S K E A A A A A D P T D K H K T L P K E K T L L P A D P A K P P A K A Q V V G W P P
 
AT4G14550.1     V R N Y R K N V M A N Q K - S G E - - A E E A M S S G - G G T V A F V K V S M D G A P Y L R K V D L K M Y T S Y K D L S
gm028045_Glyma1    V R S Y R K N M M A V Q K V S N E E V A E K T T S S T I A N S G A F V K V S M D G A P Y L R K V D L T M Y K S Y K D L S
gm055369_Glyma2    V R S Y R K N M M A V Q K V S T E D V A E K T T S S T - A N P G A F V K V S M D G A P Y L R K V D L T M Y K S Y K E L S
gm007181_Glyma0    V R S F R K N M L A V Q K S V G E E - N E K N S S S P - - - N A S F V K V S M D G A P Y L R K V D L K M Y K S Y R E L S
 
AT4G14550.1     D A L A K M F S S F T M G S Y G A Q G M I D F M N E S K V M D L L N S S E Y V P S Y E D K D G D W M L V G D V P W P M F
gm028045_Glyma1    D A L A K M F S S F T M G N Y G A Q G M I D F M N E S K L M D L L N S S E Y V P T Y E D K D G D W M L V G D V P W E M F
gm055369_Glyma2    D A L A K M F S S F T M G N Y G A Q G M I D F M N E S K L M D L L N S S E Y V P S Y E D K D G D W M L V G D V P W E M F
gm007181_Glyma0    D S L G K M F S S F T I G N C E S Q G M K D F M N E S K L N D L L N S S D Y V P T Y E D K D G D W M L V G D V P W E M F
 
AT4G14550.1     V E S C K R L R I M K G S E A I - - G L A P R A M E K F K N R S
gm028045_Glyma1    V G S C K R L R I M K G S E A I - - G L A P R A M E K C K S R S
gm055369_Glyma2    V E S C K R L R I M K G S E A I - - G L A P R A M E K C K S R S
gm007181_Glyma0    V E S C K R L R I M K G K E A I G L G L A P R A M A K S K N R S
 
0