fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G14560.1 NLKDTELRLGLPGAQE at 12/168 in AT4G14560.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt002787 NLKATELRLGLPGSDE in 13/195 AT5G43700.1 1st_not 0.636065573 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G14560.1     MEVTNGLNLKDTELRLGLPGAQE-EQQLELSCVRSNNKRKNNDSTEES------------
pt002787_POPTR_ MAYESDLNLKATELRLGLPGSDEPEKPSTTPSVRS-NKRASPEISEESRSKGSSSVSSNV
                *   ..**** *********::* *:    ..*** *** . : :***            

AT4G14560.1     ------APPPAKTQIVGWPPVRSNRKN----NNNKNVS----YVKVSMDGAPYLRKIDLK
pt002787_POPTR_ ENGERDSAPPAKAQVVGWPPIRSYRKNCLQPKKNDQVDGAGMYVKVSVDGAPYLRKIDLK
                      :.****:*:*****:** ***    ::*.:*.    *****:************

AT4G14560.1     MYKNYPELLKALENMFKFTVGEYSEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSC
pt002787_POPTR_ VYKSYPELLKALENMFKLTIGEYSENEGYNGSEFAPTYEDKDGDWMLVGDVPWDMFISSC
                :**.*************:*:*****.***:** *.********************* ***

AT4G14560.1     QKLRIMKGSEAPTAL--
pt002787_POPTR_ KRLRIMKGSEA-RGLGC
                ::*********  .*
BoxShade v3.31 C (beta, 970507) Output
AT4G14560.1     M E V T N G L N L K D T E L R L G L P G A Q E - E Q Q L E L S C V R S N N K R K N N D S T E E S - - - - - - - - - - - -
pt002787_POPTR_    M A Y E S D L N L K A T E L R L G L P G S D E P E K P S T T P S V R S - N K R A S P E I S E E S R S K G S S S V S S N V
 
AT4G14560.1     - - - - - - A P P P A K T Q I V G W P P V R S N R K N - - - - N N N K N V S - - - - Y V K V S M D G A P Y L R K I D L K
pt002787_POPTR_    E N G E R D S A P P A K A Q V V G W P P I R S Y R K N C L Q P K K N D Q V D G A G M Y V K V S V D G A P Y L R K I D L K
 
AT4G14560.1     M Y K N Y P E L L K A L E N M F K F T V G E Y S E R E G Y K G S G F V P T Y E D K D G D W M L V G D V P W D M F S S S C
pt002787_POPTR_    V Y K S Y P E L L K A L E N M F K L T I G E Y S E N E G Y N G S E F A P T Y E D K D G D W M L V G D V P W D M F I S S C
 
AT4G14560.1     Q K L R I M K G S E A P T A L - -
pt002787_POPTR_    K R L R I M K G S E A - R G L G C
 
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