fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G14560.1 NLKDTELRLGLPGAQE at 12/168 in AT4G14560.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm055370 NLKATELRLGLPGTEE in 18/194 AT5G43700.1 1st_not 0.642622950 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G14560.1     MEVT-----NGLNLKDTELRLGLPGAQEEQQLELSC-VRSNNKRKNNDSTEE-------S
gm055370_Glyma2 MENTTVTYQTDLNLKATELRLGLPGTEESEEKTLSAGARINNKRPLTETSDECASNGTSS
                ** *     ..**** *********::*.::  **. .* ****  .::::*       *

AT4G14560.1     AP-------PPAKTQIVGWPPVRSNRKNNNNKNVS---YVKVSMDGAPYLRKIDLKMYKN
gm055370_Glyma2 APHEKTETAPPAKTKIVGWPPIRSYRKNSLQESEGAGIYVKVSMDGAPYLRKIDLKVYGG
                **       *****:******:** ***. ::. .   ******************:* .

AT4G14560.1     YPELLKALENMFKFTVGEYSEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLR
gm055370_Glyma2 YTQLLKSLENMFKLTIGEHSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCRRLR
                *.:***:******:*:**:**:******.:.********************* :**::**

AT4G14560.1     IMKGSEAPTAL----
gm055370_Glyma2 IMKGSEA-RGLGCAV
                *******  .*
BoxShade v3.31 C (beta, 970507) Output
AT4G14560.1     M E V T - - - - - N G L N L K D T E L R L G L P G A Q E E Q Q L E L S C - V R S N N K R K N N D S T E E - - - - - - - S
gm055370_Glyma2    M E N T T V T Y Q T D L N L K A T E L R L G L P G T E E S E E K T L S A G A R I N N K R P L T E T S D E C A S N G T S S
 
AT4G14560.1     A P - - - - - - - P P A K T Q I V G W P P V R S N R K N N N N K N V S - - - Y V K V S M D G A P Y L R K I D L K M Y K N
gm055370_Glyma2    A P H E K T E T A P P A K T K I V G W P P I R S Y R K N S L Q E S E G A G I Y V K V S M D G A P Y L R K I D L K V Y G G
 
AT4G14560.1     Y P E L L K A L E N M F K F T V G E Y S E R E G Y K G S G F V P T Y E D K D G D W M L V G D V P W D M F S S S C Q K L R
gm055370_Glyma2    Y T Q L L K S L E N M F K L T I G E H S E K E G Y K G S D Y A P T Y E D K D G D W M L V G D V P W D M F V T S C R R L R
 
AT4G14560.1     I M K G S E A P T A L - - - -
gm055370_Glyma2    I M K G S E A - R G L G C A V
 
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