fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G17500.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt009912 not found in 280aa AT4G17500.1 not_1st 0.487964989 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G17500.1     MSMTADS---QSDYAFLESIRRHLLGESEPILSESTASSVTQS---CVTGQSIKP-----
pt009912_POPTR_ --MYGQSLLDQPDYAFLDPVRLHLQGE-----TVSTAPTTTCSYTPAITTTTAAPAANYT
                  * .:*   *.*****:.:* ** **     : ***.:.* *   .:*  :  *     

AT4G17500.1     ---VYGRNPSFSKLYPCFTESWGDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDR
pt009912_POPTR_ PPLVYCRSTSFSSLYPCLTENWGDLPLKVDDSEDMFLYAVLRDAVTVGWVPSLKTDQLVQ
                   ** *..***.****:**.******* :*****::*.:*.**.  ** ** .:.:  :

AT4G17500.1     SSFPSVKIETPESFAA---VDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEI
pt009912_POPTR_ PNFPLVKLEPTENLAVSPPSTAVPVAE-------PAVLPSKGKHYRGVRQRPWGKFAAEI
                ..** **:*..*.:*.     :*** :       .** .:********************

AT4G17500.1     RDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRS
pt009912_POPTR_ RDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRS
                *****************************:************************:.****

AT4G17500.1     S--FSSSNENGAPKKRR---------TVAAGGGMDKGLTVKCEVVEVARGDRLLVL
pt009912_POPTR_ SPEPSSSVDSGSPKRRKKVGGTAGAATVVAKAGLEIGNGVGCQV--GTHGEQMLVI
                *   *** :.*:**:*:         **.* .*:: *  * *:*   ::*:::**:
BoxShade v3.31 C (beta, 970507) Output
AT4G17500.1     M S M T A D S - - - Q S D Y A F L E S I R R H L L G E S E P I L S E S T A S S V T Q S - - - C V T G Q S I K P - - - - -
pt009912_POPTR_    - - M Y G Q S L L D Q P D Y A F L D P V R L H L Q G E - - - - - T V S T A P T T T C S Y T P A I T T T T A A P A A N Y T
 
AT4G17500.1     - - - V Y G R N P S F S K L Y P C F T E S W G D L P L K E N D S E D M L V Y G I L N D A F H G G W E P S S S S S D E D R
pt009912_POPTR_    P P L V Y C R S T S F S S L Y P C L T E N W G D L P L K V D D S E D M F L Y A V L R D A V T V G W V P S L K T D Q L V Q
 
AT4G17500.1     S S F P S V K I E T P E S F A A - - - V D S V P V K K E K T S P V S A A V T A A K G K H Y R G V R Q R P W G K F A A E I
pt009912_POPTR_    P N F P L V K L E P T E N L A V S P P S T A V P V A E - - - - - - - P A V L P S K G K H Y R G V R Q R P W G K F A A E I
 
AT4G17500.1     R D P A K N G A R V W L G T F E T A E D A A L A Y D R A A F R M R G S R A L L N F P L R V N S G E P D P V R I K S K R S
pt009912_POPTR_    R D P A K N G A R V W L G T F E T A E D A A L A Y D R A A Y R M R G S R A L L N F P L R V N S G E P D P V R V T S K R S
 
AT4G17500.1     S - - F S S S N E N G A P K K R R - - - - - - - - - T V A A G G G M D K G L T V K C E V V E V A R G D R L L V L
pt009912_POPTR_    S P E P S S S V D S G S P K R R K K V G G T A G A A T V V A K A G L E I G N G V G C Q V - - G T H G E Q M L V I
 
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