fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G17500.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm047103 not found in 251aa AT4G17500.1 not_1st 0.474835886 II
Gm011461 not found in 255aa AT4G17500.1 not_1st 0.463894967 II
Gm029721 not found in 240aa AT4G17500.1 not_1st 0.459518599 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G17500.1     M-----SMTADSQSDYAFLESIRRHLLGESEP-ILSESTASSVTQSCVTGQSIKPVYGRN
gm047103_Glyma1 MYGR----SDSYESDLALLDSIRRHLLGESEL-IFGAPNFGSG---------------RS
gm011461_Glyma0 MYGQSSSSSSSYESDLALLDSIRHHLLGESES-IFGAPNFGSG---------------RS
gm029721_Glyma1 MYGQ-----SCYESDLALLDSIRRHLLGDSEEHRFGAPNVNSGS---------TPLYSRS
                *           :** *:*:***:****:**   :. .. .*                *.

AT4G17500.1     PSFSKLYPCFTESWGDLPLKENDSEDMLVYGILNDAFHGGWEPS--SSSSDEDRSSF--P
gm047103_Glyma1 SSFSSLDSCLSDDWGELPFKEDDSEDMVLYGVLRDAVNVGWVPSLDAGSPESVSSGF--P
gm011461_Glyma0 SSFSSLDSCLSDNWGELPFKEDDTEDMVLYGVLRDAVNVGWVPSLDAGSPESVSSGF--P
gm029721_Glyma1 SSFGRLYPCLSNDWGELPLMEDDSEDMLLYGVLRDAVNVGWVPSLDASSPESFSSAFMPP
                .**. * .*:::.**:**: *:*:***::**:*.**.: ** **  :.*.:.  *.*  *

AT4G17500.1     -SVKIETPESFAAVDSVPVKKEKTSPVSAA-----VTAAKGKHYRGVRQRPWGKFAAEIR
gm047103_Glyma1 -AVKLEP-------DVMPALINPCPPPAPAVEEKKVVPPKGKHYRGVRQRPWGKFAAEIR
gm011461_Glyma0 -AVKLEP-------DLMPALISPCPPPAAAAEEKKVVPAKGKHYRGVRQRPWGKFAAEIR
gm029721_Glyma1 VTVKSET-------DLFPAPEPICNPPVVQGPAPAVVPAKGKHYRGVRQRPWGKFAAEIR
                 :** *.       * .*.      *         *...*********************

AT4G17500.1     DPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRSS
gm047103_Glyma1 DPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSS
gm011461_Glyma0 DPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVKSKRSS
gm029721_Glyma1 DPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRVTAKRAS
                ****************************:**************:*****:***:.:**:*

AT4G17500.1     F---SSSNENGAPKKRRTVAAGGGMDKGLTVKCEVVEVARGDRLLVL
gm047103_Glyma1 ----SPESMAAAAPKRKKVMVVGTVQE--QVGSQVVECTRGEQLLVS
gm011461_Glyma0 ----SPESAAALPAKRKKVVVVGTVQE--QVGSQVAECTRGEQLLVS
gm029721_Glyma1 AEPCSSSESGSWVKKRKKV-----------VG---------------
                    *...  .   **:.*           *
BoxShade v3.31 C (beta, 970507) Output
AT4G17500.1     M - - - - - S M T A D S Q S D Y A F L E S I R R H L L G E S E P - I L S E S T A S S V T Q S C V T G Q S I K P V Y G R N
gm047103_Glyma1    M Y G R - - - - S D S Y E S D L A L L D S I R R H L L G E S E L - I F G A P N F G S G - - - - - - - - - - - - - - - R S
gm011461_Glyma0    M Y G Q S S S S S S S Y E S D L A L L D S I R H H L L G E S E S - I F G A P N F G S G - - - - - - - - - - - - - - - R S
gm029721_Glyma1    M Y G Q - - - - - S C Y E S D L A L L D S I R R H L L G D S E E H R F G A P N V N S G S - - - - - - - - - T P L Y S R S
 
AT4G17500.1     P S F S K L Y P C F T E S W G D L P L K E N D S E D M L V Y G I L N D A F H G G W E P S - - S S S S D E D R S S F - - P
gm047103_Glyma1    S S F S S L D S C L S D D W G E L P F K E D D S E D M V L Y G V L R D A V N V G W V P S L D A G S P E S V S S G F - - P
gm011461_Glyma0    S S F S S L D S C L S D N W G E L P F K E D D T E D M V L Y G V L R D A V N V G W V P S L D A G S P E S V S S G F - - P
gm029721_Glyma1    S S F G R L Y P C L S N D W G E L P L M E D D S E D M L L Y G V L R D A V N V G W V P S L D A S S P E S F S S A F M P P
 
AT4G17500.1     - S V K I E T P E S F A A V D S V P V K K E K T S P V S A A - - - - - V T A A K G K H Y R G V R Q R P W G K F A A E I R
gm047103_Glyma1    - A V K L E P - - - - - - - D V M P A L I N P C P P P A P A V E E K K V V P P K G K H Y R G V R Q R P W G K F A A E I R
gm011461_Glyma0    - A V K L E P - - - - - - - D L M P A L I S P C P P P A A A A E E K K V V P A K G K H Y R G V R Q R P W G K F A A E I R
gm029721_Glyma1    V T V K S E T - - - - - - - D L F P A P E P I C N P P V V Q G P A P A V V P A K G K H Y R G V R Q R P W G K F A A E I R
 
AT4G17500.1     D P A K N G A R V W L G T F E T A E D A A L A Y D R A A F R M R G S R A L L N F P L R V N S G E P D P V R I K S K R S S
gm047103_Glyma1    D P A K N G A R V W L G T F E T A E D A A L A Y D R A A Y R M R G S R A L L N F P L R V N S G E P D P V R V T S K R S S
gm011461_Glyma0    D P A K N G A R V W L G T F E T A E D A A L A Y D R A A Y R M R G S R A L L N F P L R V N S G E P D P V R V K S K R S S
gm029721_Glyma1    D P A K N G A R V W L G T F E T A E D A A L A Y D R A A Y R M R G S R A L L N F P L R I N S G E P E P V R V T A K R A S
 
AT4G17500.1     F - - - S S S N E N G A P K K R R T V A A G G G M D K G L T V K C E V V E V A R G D R L L V L
gm047103_Glyma1    - - - - S P E S M A A A A P K R K K V M V V G T V Q E - - Q V G S Q V V E C T R G E Q L L V S
gm011461_Glyma0    - - - - S P E S A A A L P A K R K K V V V V G T V Q E - - Q V G S Q V A E C T R G E Q L L V S
gm029721_Glyma1    A E P C S S S E S G S W V K K R K K V - - - - - - - - - - - V G - - - - - - - - - - - - - - -
 
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