fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G17810.1 GTSVDELDLELRLGHH at 191/204 in AT4G17810.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm029808 NGHLEELDLELRL in 199/206 AT4G17810.1 1st_1st 0.302107728 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G17810.1     MNGGAWMWNPNK----IEELEDDDESWEVKAFEQDTKGNISGTTWPPRSYTCNFCRREFR
gm029808_Glyma1 ------MWNPRKQQHQQQQVEDDDDSWEVRAFAEDTR-NIMGTTWPPRSYTCTFCRREFR
                      ****.*     :::****:****:** :**: ** ***********.*******

AT4G17810.1     SAQALGGHMNVHRRDRASSRAHQGSTVAAAARSGHGGMLLNSCAPPLPTTTLI---IQST
gm029808_Glyma1 SAQALGGHMNVHRRDRA--RLHQAPVPSSSS---------NPMTSSLPTSPFINIPPQDL
                *****************  * **... ::::         *. :..***:.:*    *. 

AT4G17810.1     ASNIEGLSHFYQL-----------------QNPSGIFG-NSGDMVNLYGTTSFPPSNLPF
gm029808_Glyma1 VAN-AGLCLLYHLPKSPSSTAPPFPPSPTTPSPSTLLSISSYPTTNFLMQTSFNFPGAPA
                .:*  **. :*:*                  .** ::. .*   .*:   ***  .. * 

AT4G17810.1     SMLNSPVEVPPRLIEYSTGDDESIGSMKEATGTSVD------ELDLELRLGHHPP
gm029808_Glyma1 TGINTTTTTTVSSLCYNSSKVE-----QSATSSSIDHNGHLEELDLELRL-----
                : :*:.. ..   : *.:.. *     :.**.:*:*      ********
BoxShade v3.31 C (beta, 970507) Output
AT4G17810.1     M N G G A W M W N P N K - - - - I E E L E D D D E S W E V K A F E Q D T K G N I S G T T W P P R S Y T C N F C R R E F R
gm029808_Glyma1    - - - - - - M W N P R K Q Q H Q Q Q Q V E D D D D S W E V R A F A E D T R - N I M G T T W P P R S Y T C T F C R R E F R
 
AT4G17810.1     S A Q A L G G H M N V H R R D R A S S R A H Q G S T V A A A A R S G H G G M L L N S C A P P L P T T T L I - - - I Q S T
gm029808_Glyma1    S A Q A L G G H M N V H R R D R A - - R L H Q A P V P S S S S - - - - - - - - - N P M T S S L P T S P F I N I P P Q D L
 
AT4G17810.1     A S N I E G L S H F Y Q L - - - - - - - - - - - - - - - - - Q N P S G I F G - N S G D M V N L Y G T T S F P P S N L P F
gm029808_Glyma1    V A N - A G L C L L Y H L P K S P S S T A P P F P P S P T T P S P S T L L S I S S Y P T T N F L M Q T S F N F P G A P A
 
AT4G17810.1     S M L N S P V E V P P R L I E Y S T G D D E S I G S M K E A T G T S V D - - - - - - E L D L E L R L G H H P P
gm029808_Glyma1    T G I N T T T T T T V S S L C Y N S S K V E - - - - - Q S A T S S S I D H N G H L E E L D L E L R L - - - - -
 
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