fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G18890.1 ECVSDDLELTLGNSRT at 272/284 in AT4G18890.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt020395 ECVSDDLELTLGNSNT in 320/331 AT1G78700.1 1st_not 0.653526970 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G18890.1     MTSGTRTPTWKERENNKRRERRRRAIAAKIFAGLRIHGNFKLPKHCDNNEVLKALCNEAG
pt020395_POPTR_ MTSGTRMPTWKERENNKRRERRRRAIAAKIYSGLRMYGNYKLPKHCDNNEVLKALCKEAG
                ****** ***********************::***::**:****************:***

AT4G18890.1     WTVEDDGTTYRKGCKPMDRMDLMNGSTSASPCSSYQHSPRASYNPSPSSSSFPSP-----
pt020395_POPTR_ WTVEEDGTTYRKGCKPVERMDIMGGSASASPCSSYHRSPCASYNPSPASSSFPSPVSSHY
                ****:***********::***:*.**:********::** *******:*******     

AT4G18890.1     ---TNPFGDANSLIPWLKNLSSNSPSKLP------FFHGNSISAPVTPPL----ARSP-T
pt020395_POPTR_ AANANGNADPNSLIPWLKNLSSGSSSASPKHPHHLFIHTGSISAPVTPPLSSPTARTPRT
                   :*  .*.************.*.*  *      *:* .**********    **:* *

AT4G18890.1     RD--------------------------------QVTIPDSGWLSGMQTPQSGPSSPTFS
pt020395_POPTR_ KNDWDDAAAGQSWMGQNYSFMPSSMPSSTPPSPGRHVLPDSGWLAGIQIPQSGPSSPTFS
                ::                                : .:******:*:* ***********

AT4G18890.1     LVSRNPF-FDKEAFKMGDCNSPMWTPGQSGNCSPAIPAGVDQNSDVPMADGMTAEFAFGC
pt020395_POPTR_ LVSRNPFGFREEA--LSGAGSRMWTPGQSGTCSPAIPAGIDQTADVPMSDSMAAEFAFGS
                ******* * :**  :....* ********.********:**.:****:*.*:******.

AT4G18890.1     NAMAANGMVKPWEGERIHGECVSDDLELTLGNSRTR
pt020395_POPTR_ NAA---GLVKPWEGERIHEECVSDDLELTLGNSNTR
                **    *:********** **************.**
BoxShade v3.31 C (beta, 970507) Output
AT4G18890.1     M T S G T R T P T W K E R E N N K R R E R R R R A I A A K I F A G L R I H G N F K L P K H C D N N E V L K A L C N E A G
pt020395_POPTR_    M T S G T R M P T W K E R E N N K R R E R R R R A I A A K I Y S G L R M Y G N Y K L P K H C D N N E V L K A L C K E A G
 
AT4G18890.1     W T V E D D G T T Y R K G C K P M D R M D L M N G S T S A S P C S S Y Q H S P R A S Y N P S P S S S S F P S P - - - - -
pt020395_POPTR_    W T V E E D G T T Y R K G C K P V E R M D I M G G S A S A S P C S S Y H R S P C A S Y N P S P A S S S F P S P V S S H Y
 
AT4G18890.1     - - - T N P F G D A N S L I P W L K N L S S N S P S K L P - - - - - - F F H G N S I S A P V T P P L - - - - A R S P - T
pt020395_POPTR_    A A N A N G N A D P N S L I P W L K N L S S G S S S A S P K H P H H L F I H T G S I S A P V T P P L S S P T A R T P R T
 
AT4G18890.1     R D - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Q V T I P D S G W L S G M Q T P Q S G P S S P T F S
pt020395_POPTR_    K N D W D D A A A G Q S W M G Q N Y S F M P S S M P S S T P P S P G R H V L P D S G W L A G I Q I P Q S G P S S P T F S
 
AT4G18890.1     L V S R N P F - F D K E A F K M G D C N S P M W T P G Q S G N C S P A I P A G V D Q N S D V P M A D G M T A E F A F G C
pt020395_POPTR_    L V S R N P F G F R E E A - - L S G A G S R M W T P G Q S G T C S P A I P A G I D Q T A D V P M S D S M A A E F A F G S
 
AT4G18890.1     N A M A A N G M V K P W E G E R I H G E C V S D D L E L T L G N S R T R
pt020395_POPTR_    N A A - - - G L V K P W E G E R I H E E C V S D D L E L T L G N S N T R
 
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