fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G18890.1 ECVSDDLELTLGNSRT at 272/284 in AT4G18890.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb024553 not found in 526aa AT1G78700.1 1st_not 0.504149377 II
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G18890.1     --------MTS---------------GTRTPTWKERENNKRRERRRRAIAAKIFAGLRIH
Sb024553_Sorbi1 AGARAGRDMASGGGGGAGGGLGAAGAGGRMPTWRERENNKRRERRRRAIAAKIFAGLRAH
                        *:*               * * ***:************************ *

AT4G18890.1     GNFKLPKHCDNNEVLKALCNEAGWTVEDDGTTYRKGCKPMDRMDLMNGSTSASPCSSYQH
Sb024553_Sorbi1 GGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRKGSKPMERMDHIGCSVSPSPCSSYQV
                *.:*********************.** ********.***:*** :. *.*.******* 

AT4G18890.1     SPRASYNPSPSSSSFPS-PTNPFG----------DANSLIPWLKNLSSNSPSK----LP-
Sb024553_Sorbi1 SPRASYNASPTSSSFPSGASSPFLPPNEMVNGGIDGNPILPWLKTFSNGTPSKKHPLLPP
                *******.**:****** .:.**           *.*.::****.:*..:***    ** 

AT4G18890.1     -FFHGNSISAPVTPPL----ARSPTR----DQVTI-------------------------
Sb024553_Sorbi1 LLIHGGSISAPVTPPLSSPSARTPRMKTDWDEATIQPPWHGANSPTIVNSTPPSPGRSIA
                 ::**.**********    **:*      *:.**                         

AT4G18890.1     PDSGWLSGMQTPQSGPSSPTFSLVSRNPF--FDKEAFKMGDCNSPMWTPGQSGNCSPAIP
Sb024553_Sorbi1 PDPAWLAGIQISSTSPNSPTFSLVSTNPFSVF-KESIPVGNSSSRMCTPGQSGTCSPAIP
                **..**:*:* ..:.*.******** ***  * **:: :*:..* * ******.******

AT4G18890.1     AGVDQNSDVPMADGMTAEFAFGCN---AMAANGMVKPWEGERIHGECVSDDLELTLGNSR
Sb024553_Sorbi1 -GMLQHSDVHMMDAVSDEFAFGSSTNGAQQAAGLVRAWEGERIHEDSGSDDLELTLKL--
                 *: *:*** * *.:: *****..   *  * *:*:.******* :. ********    

AT4G18890.1     TR
Sb024553_Sorbi1 --
BoxShade v3.31 C (beta, 970507) Output
AT4G18890.1     - - - - - - - - M T S - - - - - - - - - - - - - - - G T R T P T W K E R E N N K R R E R R R R A I A A K I F A G L R I H
Sb024553_Sorbi1    A G A R A G R D M A S G G G G G A G G G L G A A G A G G R M P T W R E R E N N K R R E R R R R A I A A K I F A G L R A H
 
AT4G18890.1     G N F K L P K H C D N N E V L K A L C N E A G W T V E D D G T T Y R K G C K P M D R M D L M N G S T S A S P C S S Y Q H
Sb024553_Sorbi1    G G Y K L P K H C D N N E V L K A L C N E A G W V V E P D G T T Y R K G S K P M E R M D H I G C S V S P S P C S S Y Q V
 
AT4G18890.1     S P R A S Y N P S P S S S S F P S - P T N P F G - - - - - - - - - - D A N S L I P W L K N L S S N S P S K - - - - L P -
Sb024553_Sorbi1    S P R A S Y N A S P T S S S F P S G A S S P F L P P N E M V N G G I D G N P I L P W L K T F S N G T P S K K H P L L P P
 
AT4G18890.1     - F F H G N S I S A P V T P P L - - - - A R S P T R - - - - D Q V T I - - - - - - - - - - - - - - - - - - - - - - - - -
Sb024553_Sorbi1    L L I H G G S I S A P V T P P L S S P S A R T P R M K T D W D E A T I Q P P W H G A N S P T I V N S T P P S P G R S I A
 
AT4G18890.1     P D S G W L S G M Q T P Q S G P S S P T F S L V S R N P F - - F D K E A F K M G D C N S P M W T P G Q S G N C S P A I P
Sb024553_Sorbi1    P D P A W L A G I Q I S S T S P N S P T F S L V S T N P F S V F - K E S I P V G N S S S R M C T P G Q S G T C S P A I P
 
AT4G18890.1     A G V D Q N S D V P M A D G M T A E F A F G C N - - - A M A A N G M V K P W E G E R I H G E C V S D D L E L T L G N S R
Sb024553_Sorbi1    - G M L Q H S D V H M M D A V S D E F A F G S S T N G A Q Q A A G L V R A W E G E R I H E D S G S D D L E L T L K L - -
 
AT4G18890.1     T R
Sb024553_Sorbi1    - -
 
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