fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G18960.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm036857 not found in 241aa AT4G18960.1 not_1st 0.676724137 II
Gm021044 not found in 243aa AT4G18960.1 not_1st 0.599137931 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G18960.1     TAYQSELGGDSSPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVA
gm021044_Glyma0 MAFPNQSMSSESPQRKMGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVA
gm036857_Glyma1 --------MSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVA
                         . ** ** **************.****************************

AT4G18960.1     LIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTG-SVAEINAQYYQQESAKLRQQIIS
gm021044_Glyma0 LIVFSNRGRLYEYANNSVKASIERYKKASSDSSSGGRSASEANAQFYQQEAAKLRVQISN
gm036857_Glyma1 LIVFSSRGRLYEYANNSVKATIERYKKASSDSSGAG-SASEANAQFYQQEADKLRQQISN
                *****.*******:*****.:******* **.*. * *.:* ***:****: *** ** .

AT4G18960.1     IQNSN-----RQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREV
gm021044_Glyma0 LQNHN-----RQMMGEGLSTMNGKDLKNLETKLEKGISRIRSKKNEMLFAEIEHMKKREI
gm036857_Glyma1 LQNNNRQLNCRQMMGDSLGSLTAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKREI
                :** *     **:**: :.::. *:*:*** :**:.*:********:**:**::*:***:

AT4G18960.1     DLHNDNQILRAKIAENERNNPSISLMPGGSNYEQLMPPPQTQSQPFDSRNYFQVAALQP-
gm021044_Glyma0 YLHNDNQLLRAKIGEGERSHHNVNGLSGTTSYESM----QS---QFDSRGFFQVTGLQPN
gm036857_Glyma1 DLHNNNQLLRAKIAESERNHHNMAVLPGGSNYDSM----QSSQQQFDSRGYFQVTGLQP-
                 ***:**:*****.*.**.: .:  :.* :.*:.:    *:    ****.:***:.*** 

AT4G18960.1     NNHHYSSAGRQDQTALQLV
gm021044_Glyma0 NNNQYA---GQD-MSLQFV
gm036857_Glyma1 -NNQYA---RQDQMSLQLV
                 *::*:    **  :**:*
BoxShade v3.31 C (beta, 970507) Output
AT4G18960.1     T A Y Q S E L G G D S S P L R K S G R G K I E I K R I E N T T N R Q V T F C K R R N G L L K K A Y E L S V L C D A E V A
gm021044_Glyma0    M A F P N Q S M S S E S P Q R K M G R G K I E I K R I E N T T S R Q V T F C K R R N G L L K K A Y E L S V L C D A E V A
gm036857_Glyma1    - - - - - - - - M S V S P Q R K M G R G K I E I K R I E N T T N R Q V T F C K R R N G L L K K A Y E L S V L C D A E V A
 
AT4G18960.1     L I V F S S R G R L Y E Y S N N S V K G T I E R Y K K A I S D N S N T G - S V A E I N A Q Y Y Q Q E S A K L R Q Q I I S
gm021044_Glyma0    L I V F S N R G R L Y E Y A N N S V K A S I E R Y K K A S S D S S S G G R S A S E A N A Q F Y Q Q E A A K L R V Q I S N
gm036857_Glyma1    L I V F S S R G R L Y E Y A N N S V K A T I E R Y K K A S S D S S G A G - S A S E A N A Q F Y Q Q E A D K L R Q Q I S N
 
AT4G18960.1     I Q N S N - - - - - R Q L M G E T I G S M S P K E L R N L E G R L E R S I T R I R S K K N E L L F S E I D Y M Q K R E V
gm021044_Glyma0    L Q N H N - - - - - R Q M M G E G L S T M N G K D L K N L E T K L E K G I S R I R S K K N E M L F A E I E H M K K R E I
gm036857_Glyma1    L Q N N N R Q L N C R Q M M G D S L G S L T A K D L K N L E T K L E K G I S R I R S K K N E L L F A E I E Y M Q K R E I
 
AT4G18960.1     D L H N D N Q I L R A K I A E N E R N N P S I S L M P G G S N Y E Q L M P P P Q T Q S Q P F D S R N Y F Q V A A L Q P -
gm021044_Glyma0    Y L H N D N Q L L R A K I G E G E R S H H N V N G L S G T T S Y E S M - - - - Q S - - - Q F D S R G F F Q V T G L Q P N
gm036857_Glyma1    D L H N N N Q L L R A K I A E S E R N H H N M A V L P G G S N Y D S M - - - - Q S S Q Q Q F D S R G Y F Q V T G L Q P -
 
AT4G18960.1     N N H H Y S S A G R Q D Q T A L Q L V
gm021044_Glyma0    N N N Q Y A - - - G Q D - M S L Q F V
gm036857_Glyma1    - N N Q Y A - - - R Q D Q M S L Q L V
 
0