fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G20970.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm041497 not found in 171aa AT4G20970.1 1st_1st 0.395953757 Ib
Pt024771 not found in 235aa AT4G20970.1 1st_1st 0.447976878 Ia
Pt018872 not found in 162aa AT4G20970.1 not_1st 0.401734104 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G20970.1     ----------------------------------------------------MEPSHSNT
pt018872_POPTR_ ----------------------------------------------------ME---HNP
pt024771_POPTR_ MYHKSLLDPIKQRQASISNYIGREIHICIVVQSSSFFFFLEVVLATIAASTLME---NNP
gm041497_Glyma1 ----------------------------------------------------ME---NNP
                                                                    **    *.

AT4G20970.1     GQSRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTEPL-TLPDQLDEAANYIKKLQVNV
pt018872_POPTR_ SSSR-TDRKLIERNRRNQMKELYSQLNSLVPHQSSREPVLSVPDQLDEAASYIKRLQTNL
pt024771_POPTR_ SSSR-TDRKTIERNRRNQMKALYSQLNSLVPHQSSREPVLSLPDQLDEAASYIKRLQTNL
gm041497_Glyma1 SSSR-VERKIIERNRRNQMKALFRELNSLVPHQSSKEAI-SLPDQLEEATNYIKKLQINL
                ..** .:** :*:*** *** *: :* **:**:** *.: ::****:**:.***:** *:

AT4G20970.1     EKKRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLE
pt018872_POPTR_ EKMKEKKDSLMGM---ERADYTCKNSSGGK---TAGLRSPQIEVSEMGSTLEVVLMNGLD
pt024771_POPTR_ ERMKEKKDNLMGT---ERKNYASMSSCNGT---TTGLRSPQIEIRETGSTLEVVLITGLD
gm041497_Glyma1 EKMKDKKNMLLGI---ERPNVRMNN--GGR---TVRLNSPRIEIQQMGSALEVVLITGFD
                *: :::*  *:.    *: :    .  ..    :.  . *:**: : ** :.:.*:..::

AT4G20970.1     HKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEHDYGARSQIPE-------
pt018872_POPTR_ SRFMFIEIIRVLHEE-GAEIINASLSVVQDTVFHTIHSKVY--------QLPS-------
pt024771_POPTR_ GQFMFNETIRVLHEE-GAEIINASFSVVEDTVFHTIHSKVG-------DSAPSNGAARIS
gm041497_Glyma1 CQFMFSETIRVLHEE-GVDVVNASYKVIEGAVFHSIHC-----------QLIS-------
                 :*** * **** ** *.:: :*. .:::.:***::*.           .  .       

AT4G20970.1     -RLEKIV---NSVH------
pt018872_POPTR_ --------------------
pt024771_POPTR_ QRLNQFVQDDNAL-------
gm041497_Glyma1 --LHHII---NLLHICFFFF
BoxShade v3.31 C (beta, 970507) Output
AT4G20970.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M E P S H S N T
pt018872_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M E - - - H N P
pt024771_POPTR_    M Y H K S L L D P I K Q R Q A S I S N Y I G R E I H I C I V V Q S S S F F F F L E V V L A T I A A S T L M E - - - N N P
gm041497_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M E - - - N N P
 
AT4G20970.1     G Q S R S V D R K T V E K N R R M Q M K S L Y S E L I S L L P H H S S T E P L - T L P D Q L D E A A N Y I K K L Q V N V
pt018872_POPTR_    S S S R - T D R K L I E R N R R N Q M K E L Y S Q L N S L V P H Q S S R E P V L S V P D Q L D E A A S Y I K R L Q T N L
pt024771_POPTR_    S S S R - T D R K T I E R N R R N Q M K A L Y S Q L N S L V P H Q S S R E P V L S L P D Q L D E A A S Y I K R L Q T N L
gm041497_Glyma1    S S S R - V E R K I I E R N R R N Q M K A L F R E L N S L V P H Q S S K E A I - S L P D Q L E E A T N Y I K K L Q I N L
 
AT4G20970.1     E K K R E R K R N L V A T T T L E K L N S V G S S S V S S S V D V S V P R K L P K I E I Q E T G S I F H I F L V T S L E
pt018872_POPTR_    E K M K E K K D S L M G M - - - E R A D Y T C K N S S G G K - - - T A G L R S P Q I E V S E M G S T L E V V L M N G L D
pt024771_POPTR_    E R M K E K K D N L M G T - - - E R K N Y A S M S S C N G T - - - T T G L R S P Q I E I R E T G S T L E V V L I T G L D
gm041497_Glyma1    E K M K D K K N M L L G I - - - E R P N V R M N N - - G G R - - - T V R L N S P R I E I Q Q M G S A L E V V L I T G F D
 
AT4G20970.1     H K F M F C E I I R V L T E E L G A E I T H A G Y S I V D D A V F H T L H C K V E E H D Y G A R S Q I P E - - - - - - -
pt018872_POPTR_    S R F M F I E I I R V L H E E - G A E I I N A S L S V V Q D T V F H T I H S K V Y - - - - - - - - Q L P S - - - - - - -
pt024771_POPTR_    G Q F M F N E T I R V L H E E - G A E I I N A S F S V V E D T V F H T I H S K V G - - - - - - - D S A P S N G A A R I S
gm041497_Glyma1    C Q F M F S E T I R V L H E E - G V D V V N A S Y K V I E G A V F H S I H C - - - - - - - - - - - Q L I S - - - - - - -
 
AT4G20970.1     - R L E K I V - - - N S V H - - - - - -
pt018872_POPTR_    - - - - - - - - - - - - - - - - - - - -
pt024771_POPTR_    Q R L N Q F V Q D D N A L - - - - - - -
gm041497_Glyma1    - - L H H I I - - - N L L H I C F F F F
 
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