fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G20970.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt018872 not found in 162aa AT4G20970.1 not_1st 0.401734104 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G20970.1     ME--PSHSNTGQSRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTEP-LTLPDQLDEAA
pt018872_POPTR_ MEHNPSSSRT------DRKLIERNRRNQMKELYSQLNSLVPHQSSREPVLSVPDQLDEAA
                **  ** *.*      *** :*:*** ***.***:* **:**:** ** *::********

AT4G20970.1     NYIKKLQVNVEKKRERKRNLVATTTLEKL-----NSVGSSSVSSSVDVSVPRKLPKIEIQ
pt018872_POPTR_ SYIKRLQTNLEKMKEKKDSLMG---MERADYTCKNSSGGKTAG--------LRSPQIEVS
                .***:**.*:** :*:* .*:.   :*:      ** *..:..         : *:**:.

AT4G20970.1     ETGSIFHIFLVTSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEHDY
pt018872_POPTR_ EMGSTLEVVLMNGLDSRFMFIEIIRVLHEE-GAEIINASLSVVQDTVFHTIHSKV-----
                * ** :.:.*:..*: :*** ****** ** **** :*. *:*:*:****:*.**     

AT4G20970.1     GARSQIPERLEKIVNSVH
pt018872_POPTR_ ---YQLPS----------
                    *:*.
BoxShade v3.31 C (beta, 970507) Output
AT4G20970.1     M E - - P S H S N T G Q S R S V D R K T V E K N R R M Q M K S L Y S E L I S L L P H H S S T E P - L T L P D Q L D E A A
pt018872_POPTR_    M E H N P S S S R T - - - - - - D R K L I E R N R R N Q M K E L Y S Q L N S L V P H Q S S R E P V L S V P D Q L D E A A
 
AT4G20970.1     N Y I K K L Q V N V E K K R E R K R N L V A T T T L E K L - - - - - N S V G S S S V S S S V D V S V P R K L P K I E I Q
pt018872_POPTR_    S Y I K R L Q T N L E K M K E K K D S L M G - - - M E R A D Y T C K N S S G G K T A G - - - - - - - - L R S P Q I E V S
 
AT4G20970.1     E T G S I F H I F L V T S L E H K F M F C E I I R V L T E E L G A E I T H A G Y S I V D D A V F H T L H C K V E E H D Y
pt018872_POPTR_    E M G S T L E V V L M N G L D S R F M F I E I I R V L H E E - G A E I I N A S L S V V Q D T V F H T I H S K V - - - - -
 
AT4G20970.1     G A R S Q I P E R L E K I V N S V H
pt018872_POPTR_    - - - Y Q L P S - - - - - - - - - -
 
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