fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G20970.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt024771 not found in 235aa AT4G20970.1 1st_1st 0.447976878 Ia
Pt018872 not found in 162aa AT4G20970.1 not_1st 0.401734104 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G20970.1     ----------------------------------------------------ME--PSHS
pt018872_POPTR_ ----------------------------------------------------MEHNPSSS
pt024771_POPTR_ MYHKSLLDPIKQRQASISNYIGREIHICIVVQSSSFFFFLEVVLATIAASTLMENNPSSS
                                                                    **  ** *

AT4G20970.1     NTGQSRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTEP-LTLPDQLDEAANYIKKLQV
pt018872_POPTR_ RT------DRKLIERNRRNQMKELYSQLNSLVPHQSSREPVLSVPDQLDEAASYIKRLQT
pt024771_POPTR_ RT------DRKTIERNRRNQMKALYSQLNSLVPHQSSREPVLSLPDQLDEAASYIKRLQT
                .*      *** :*:*** *** ***:* **:**:** ** *::********.***:**.

AT4G20970.1     NVEKKRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTS
pt018872_POPTR_ NLEKMKEKKDSLMGM---ERAD---YTCKNSSGGKTAGLRSPQIEVSEMGSTLEVVLMNG
pt024771_POPTR_ NLERMKEKKDNLMGT---ERKN---YASMSSCNGTTTGLRSPQIEIRETGSTLEVVLITG
                *:*: :*:* .*:.    *: :    :. .*. . :.  : *:**: * ** :.:.*:..

AT4G20970.1     LEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEHDYGARSQIPE-----
pt018872_POPTR_ LDSRFMFIEIIRVLHEE-GAEIINASLSVVQDTVFHTIHSKVY--------QLPS-----
pt024771_POPTR_ LDGQFMFNETIRVLHEE-GAEIINASFSVVEDTVFHTIHSKVGD-------SAPSNGAAR
                *: :*** * **** ** **** :*. *:*:*:****:*.**         . *.     

AT4G20970.1     ---RLEKIV---NSVH
pt018872_POPTR_ ----------------
pt024771_POPTR_ ISQRLNQFVQDDNAL-
BoxShade v3.31 C (beta, 970507) Output
AT4G20970.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M E - - P S H S
pt018872_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M E H N P S S S
pt024771_POPTR_    M Y H K S L L D P I K Q R Q A S I S N Y I G R E I H I C I V V Q S S S F F F F L E V V L A T I A A S T L M E N N P S S S
 
AT4G20970.1     N T G Q S R S V D R K T V E K N R R M Q M K S L Y S E L I S L L P H H S S T E P - L T L P D Q L D E A A N Y I K K L Q V
pt018872_POPTR_    R T - - - - - - D R K L I E R N R R N Q M K E L Y S Q L N S L V P H Q S S R E P V L S V P D Q L D E A A S Y I K R L Q T
pt024771_POPTR_    R T - - - - - - D R K T I E R N R R N Q M K A L Y S Q L N S L V P H Q S S R E P V L S L P D Q L D E A A S Y I K R L Q T
 
AT4G20970.1     N V E K K R E R K R N L V A T T T L E K L N S V G S S S V S S S V D V S V P R K L P K I E I Q E T G S I F H I F L V T S
pt018872_POPTR_    N L E K M K E K K D S L M G M - - - E R A D - - - Y T C K N S S G G K T A G L R S P Q I E V S E M G S T L E V V L M N G
pt024771_POPTR_    N L E R M K E K K D N L M G T - - - E R K N - - - Y A S M S S C N G T T T G L R S P Q I E I R E T G S T L E V V L I T G
 
AT4G20970.1     L E H K F M F C E I I R V L T E E L G A E I T H A G Y S I V D D A V F H T L H C K V E E H D Y G A R S Q I P E - - - - -
pt018872_POPTR_    L D S R F M F I E I I R V L H E E - G A E I I N A S L S V V Q D T V F H T I H S K V Y - - - - - - - - Q L P S - - - - -
pt024771_POPTR_    L D G Q F M F N E T I R V L H E E - G A E I I N A S F S V V E D T V F H T I H S K V G D - - - - - - - S A P S N G A A R
 
AT4G20970.1     - - - R L E K I V - - - N S V H
pt018872_POPTR_    - - - - - - - - - - - - - - - -
pt024771_POPTR_    I S Q R L N Q F V Q D D N A L -
 
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