fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G24060.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt029936 not found in 247aa AT4G24060.1 not_1st 0.402654867 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G24060.1     MDTAQWPQEIVVKPLEEIVTNTCPKPQPQPLQPQQPPSVGGERKARPEKDQAVNCPRCNS
pt029936_POPTR_ MDTAQWPQEIVVKPIEEIVVNTCSK----------PPAL--ERKVRPQKEQALNCPRCNS
                **************:****.***.*          **::  ***.**:*:**:*******

AT4G24060.1     TNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSHSSSSDISNNHS
pt029936_POPTR_ TNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRSIPVGGGSRKNKRSSASSSSSSKKLP
                ********************* ************.************* :***. *:: .

AT4G24060.1     DSTQPATKKHLSDHHHHLMSMSQQGLTGQNPKFLETTQQDLNLGFSPHGMIRTNFTDLIH
pt029936_POPTR_ DLISPPTLSQTSTENHKI----HEG-------------QDLNLAFPSTQGIRT-------
                *  .*.* .: * .:*::    ::*             *****.*..   ***       

AT4G24060.1     NIGNNTNKSNNNNNPLIVSSCSAMATSSLDLIRNNSNNGNSSNSSFMGFPVHNQDPAS--
pt029936_POPTR_ ----------------------------LELLTGISSRGLNS----FPMPVH-QDPSTLY
                                            *:*: . *..* .*    : :*** ***::  

AT4G24060.1     -GGFSMQDHYKPCNTNTTLLGFSLDHHHNNGFHGGFQGGEEGGEGGDDVNGRHLFPFEDL
pt029936_POPTR_ PSGFPLQD-FKPT------LSFSLD---------GLGSGYGDLQGVHETNGRLLFPFEDL
                 .**.:** :**       *.****         *: .*  . :* .:.*** *******

AT4G24060.1     KLPVSSSSATINVDINEHQKRGSGSDAAATSGGYWTGMLSGGSWC
pt029936_POPTR_ KQQVSSTA-----DIEQNKEHGD-------STGYWTGMLGGGSW-
                *  ***::     **::::::*.       * *******.****
BoxShade v3.31 C (beta, 970507) Output
AT4G24060.1     M D T A Q W P Q E I V V K P L E E I V T N T C P K P Q P Q P L Q P Q Q P P S V G G E R K A R P E K D Q A V N C P R C N S
pt029936_POPTR_    M D T A Q W P Q E I V V K P I E E I V V N T C S K - - - - - - - - - - P P A L - - E R K V R P Q K E Q A L N C P R C N S
 
AT4G24060.1     T N T K F C Y Y N N Y S L T Q P R Y F C K G C R R Y W T E G G S L R N I P V G G G S R K N K R S H S S S S D I S N N H S
pt029936_POPTR_    T N T K F C Y Y N N Y S L T Q P R Y F C K T C R R Y W T E G G S L R S I P V G G G S R K N K R S S A S S S S S S K K L P
 
AT4G24060.1     D S T Q P A T K K H L S D H H H H L M S M S Q Q G L T G Q N P K F L E T T Q Q D L N L G F S P H G M I R T N F T D L I H
pt029936_POPTR_    D L I S P P T L S Q T S T E N H K I - - - - H E G - - - - - - - - - - - - - Q D L N L A F P S T Q G I R T - - - - - - -
 
AT4G24060.1     N I G N N T N K S N N N N N P L I V S S C S A M A T S S L D L I R N N S N N G N S S N S S F M G F P V H N Q D P A S - -
pt029936_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - - - - - - L E L L T G I S S R G L N S - - - - F P M P V H - Q D P S T L Y
 
AT4G24060.1     - G G F S M Q D H Y K P C N T N T T L L G F S L D H H H N N G F H G G F Q G G E E G G E G G D D V N G R H L F P F E D L
pt029936_POPTR_    P S G F P L Q D - F K P T - - - - - - L S F S L D - - - - - - - - - G L G S G Y G D L Q G V H E T N G R L L F P F E D L
 
AT4G24060.1     K L P V S S S S A T I N V D I N E H Q K R G S G S D A A A T S G G Y W T G M L S G G S W C
pt029936_POPTR_    K Q Q V S S T A - - - - - D I E Q N K E H G D - - - - - - - S T G Y W T G M L G G G S W -
 
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