fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G24060.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm055434 not found in 302aa AT4G24060.1 1st_1st 0.378318584 Ib
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G24060.1     MDTAQWPQEIVVKPLEEI-VTNTCPKPQPQPLQPQQPPSVGGERKARPEKDQAVNCPRCN
gm055434_Glyma2 MDTAQWPQEMVVKPIEDIVVTNTCPK--------------AVESKPRPQKEQAINCPRCH
                *********:****:*:* *******              . * *.**:*:**:*****:

AT4G24060.1     STNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSHSSSSDISNNH
gm055434_Glyma2 SINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSSASCSTPNNSH
                * ******************** *********:**************** :*.*  .*.*

AT4G24060.1     SDSTQPATKKHLSDHHHHLMSMSQQGLT-GQNPKFLETTQ--QDLNLGFSPHGMIRTNFT
gm055434_Glyma2 NNNNS-TNKKLLSD-----LVITPPTLSHTQNPNSNNAIHQGQDLNLAFPSSTPDFRKIS
                .:... :.** ***     : ::   *:  ***:  :: :  *****.*..      :::

AT4G24060.1     DLIHNIGNNTNKSNNNNNPLIVSSCSAMATSS-----LDLIRNNSNNGNSSNSSFMGFPV
gm055434_Glyma2 ELVQQNNNNNNSSNNSMSASASSSSTTTTTSTSHLSALELLTGITSSSSAGLTSFMPVPV
                :*::: .**.*.***. ..   **.:: :**:     *:*: . :....:. :*** .**

AT4G24060.1     HNQDPAS---GGFSMQDHYKPCNTNTTLLGFSLDHHHNNGFHGGFQGGEEGGEGGDDVNG
gm055434_Glyma2 PS-DPNSIYTCGFPLQD-FKPT------LNFSLD-----GIGNGYTSLQ------NVQSG
                 . ** *    **.:** :**       *.****     *: .*: . :      :  .*

AT4G24060.1     RHLFPFEDLKLPVSSSSATINVDINEHQKRGSGSDAAATSGGYWTGMLSGGSWC
gm055434_Glyma2 RLLFPSDDLR-QVSSSTITT---MDQKQQ--------GDSTGYWTGMLGGGSW-
                * *** :**:  ****: *    ::::*:        . * *******.****
BoxShade v3.31 C (beta, 970507) Output
AT4G24060.1     M D T A Q W P Q E I V V K P L E E I - V T N T C P K P Q P Q P L Q P Q Q P P S V G G E R K A R P E K D Q A V N C P R C N
gm055434_Glyma2    M D T A Q W P Q E M V V K P I E D I V V T N T C P K - - - - - - - - - - - - - - A V E S K P R P Q K E Q A I N C P R C H
 
AT4G24060.1     S T N T K F C Y Y N N Y S L T Q P R Y F C K G C R R Y W T E G G S L R N I P V G G G S R K N K R S H S S S S D I S N N H
gm055434_Glyma2    S I N T K F C Y Y N N Y S L T Q P R Y F C K T C R R Y W T E G G T L R N I P V G G G S R K N K R S S A S C S T P N N S H
 
AT4G24060.1     S D S T Q P A T K K H L S D H H H H L M S M S Q Q G L T - G Q N P K F L E T T Q - - Q D L N L G F S P H G M I R T N F T
gm055434_Glyma2    N N N N S - T N K K L L S D - - - - - L V I T P P T L S H T Q N P N S N N A I H Q G Q D L N L A F P S S T P D F R K I S
 
AT4G24060.1     D L I H N I G N N T N K S N N N N N P L I V S S C S A M A T S S - - - - - L D L I R N N S N N G N S S N S S F M G F P V
gm055434_Glyma2    E L V Q Q N N N N N N S S N N S M S A S A S S S S T T T T T S T S H L S A L E L L T G I T S S S S A G L T S F M P V P V
 
AT4G24060.1     H N Q D P A S - - - G G F S M Q D H Y K P C N T N T T L L G F S L D H H H N N G F H G G F Q G G E E G G E G G D D V N G
gm055434_Glyma2    P S - D P N S I Y T C G F P L Q D - F K P T - - - - - - L N F S L D - - - - - G I G N G Y T S L Q - - - - - - N V Q S G
 
AT4G24060.1     R H L F P F E D L K L P V S S S S A T I N V D I N E H Q K R G S G S D A A A T S G G Y W T G M L S G G S W C
gm055434_Glyma2    R L L F P S D D L R - Q V S S S T I T T - - - M D Q K Q Q - - - - - - - - G D S T G Y W T G M L G G G S W -
 
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