fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G24470.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm040232 not found in 307aa AT4G24470.2 1st_not 0.4176 II
Pt038013 not found in 290aa AT4G24470.2 1st_not 0.4224 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G24470.1     -----MFG-RHSIIPNNQI---GTASASAGEDHVSASATSGHIPY-----DD------ME
gm040232_Glyma1 MEPSAMYGHSQPLSMPSQI-GGGESDDGSGNEH-AVDGHHHHIQYETHALEDGA-AVVVE
pt038013_POPTR_ -----MYTPSQPMNVHNQIVSPGVDDDGAPAD--PID-HHHHIHY-----EDGTPAVVVE
                     *:   :.:   .**   *  . .:  :  . .    ** *     :*      :*

AT4G24470.1     EIPHPDSIY----GAASDLIPDGSQLVAHRSDGSELLVSRPPEGANQLTISFRGQVYVFD
gm040232_Glyma1 DVT-SDAVYVSGGGGPVE--------------------------SSQLTLSFRGQVYVFD
pt038013_POPTR_ DVS-PDSVYVTAGVAASEL---GIQ---------------PSDGSSQLTLTFRGQVYVFD
                ::. .*::*     .. :                          :.***::*********

AT4G24470.1     AVGADKVDAVLSLLGGSTELA--------PGPQVMELAQQQNHMPVVEYQSRCSLPQRAQ
gm040232_Glyma1 AVTPDKVQAVLLLLGG-CELSSGGSPCVDPGAQ-------HNQRGSMEF-PKCSLPHRAA
pt038013_POPTR_ SVTPDKVQAVLLLLGG-CELT--------PGLELT----PQNQRGVGEYPPRCTQPQRAA
                :* .***:*** ****  **:        ** :       :*:    *: .:*: *:** 

AT4G24470.1     SLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTDGAYNSGTDQDSAQDDA
gm040232_Glyma1 SLHRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSYGTDQDSGQDDS
pt038013_POPTR_ SLSRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSAKKSEGGYGWDGGQDSAQDDS
                ** ***:**: ***:*****.********* ********:*  :*. . . .***.***:

AT4G24470.1     HPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTEENQLALMKP
gm040232_Glyma1 QSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNQEHSLPPVEQ
pt038013_POPTR_ QHETSCTHCGTNSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDHSKKALEHSVAPIDL
                : * ****** .**.************:*************:*** **:  *:.:. :. 

AT4G24470.1     DD-GGSVAD----AANNLNTEAASVEEHTSMVSLANGDNSNLLGDH----------
gm040232_Glyma1 VD-EGNDSDCRTATADPAHNNLPAFSEHDNP---------ALVADHKVFQSQKMLK
pt038013_POPTR_ GETEANESD-----------SVPAINTHNNPVTYANGGDTALITDH----------
                 :  .. :*           . .:.. * .           *: **
BoxShade v3.31 C (beta, 970507) Output
AT4G24470.1     - - - - - M F G - R H S I I P N N Q I - - - G T A S A S A G E D H V S A S A T S G H I P Y - - - - - D D - - - - - - M E
gm040232_Glyma1    M E P S A M Y G H S Q P L S M P S Q I - G G G E S D D G S G N E H - A V D G H H H H I Q Y E T H A L E D G A - A V V V E
pt038013_POPTR_    - - - - - M Y T P S Q P M N V H N Q I V S P G V D D D G A P A D - - P I D - H H H H I H Y - - - - - E D G T P A V V V E
 
AT4G24470.1     E I P H P D S I Y - - - - G A A S D L I P D G S Q L V A H R S D G S E L L V S R P P E G A N Q L T I S F R G Q V Y V F D
gm040232_Glyma1    D V T - S D A V Y V S G G G G P V E - - - - - - - - - - - - - - - - - - - - - - - - - - S S Q L T L S F R G Q V Y V F D
pt038013_POPTR_    D V S - P D S V Y V T A G V A A S E L - - - G I Q - - - - - - - - - - - - - - - P S D G S S Q L T L T F R G Q V Y V F D
 
AT4G24470.1     A V G A D K V D A V L S L L G G S T E L A - - - - - - - - P G P Q V M E L A Q Q Q N H M P V V E Y Q S R C S L P Q R A Q
gm040232_Glyma1    A V T P D K V Q A V L L L L G G - C E L S S G G S P C V D P G A Q - - - - - - - H N Q R G S M E F - P K C S L P H R A A
pt038013_POPTR_    S V T P D K V Q A V L L L L G G - C E L T - - - - - - - - P G L E L T - - - - P Q N Q R G V G E Y P P R C T Q P Q R A A
 
AT4G24470.1     S L D R F R K K R N A R C F E K K V R Y G V R Q E V A L R M A R N K G Q F T S S K M T D G A Y N S G T D Q D S A Q D D A
gm040232_Glyma1    S L H R F R Q K R K E R C F D K K V R Y S V R Q E V A L R M H R N K G Q F T S S K K Q D G A N S Y G T D Q D S G Q D D S
pt038013_POPTR_    S L S R F R Q K R K E R C F D K K V R Y G V R Q E V A L R M Q R N K G Q F T S A K K S E G G Y G W D G G Q D S A Q D D S
 
AT4G24470.1     H P E I S C T H C G I S S K C T P M M R R G P S G P R T L C N A C G L F W A N R G T L R D L S K K T E E N Q L A L M K P
gm040232_Glyma1    Q S E T S C T H C G I S S K S T P M M R R G P S G P R S L C N A C G L F W A N R G A L R D L S K R N Q E H S L P P V E Q
pt038013_POPTR_    Q H E T S C T H C G T N S K S T P M M R R G P S G P R S L C N A C G L F W A N R G T L R D H S K K A L E H S V A P I D L
 
AT4G24470.1     D D - G G S V A D - - - - A A N N L N T E A A S V E E H T S M V S L A N G D N S N L L G D H - - - - - - - - - -
gm040232_Glyma1    V D - E G N D S D C R T A T A D P A H N N L P A F S E H D N P - - - - - - - - - A L V A D H K V F Q S Q K M L K
pt038013_POPTR_    G E T E A N E S D - - - - - - - - - - - S V P A I N T H N N P V T Y A N G G D T A L I T D H - - - - - - - - - -
 
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