fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G25490.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt026202 not found in 248aa AT5G51990.1 not_not 0.461916461 III
Pt029739 not found in 213aa AT4G25480.1 not_not 0.410319410 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G25490.1     MNSF--------------------------SAFSEM--------------FGSDYEPQGG
pt029739_POPTR_ -------------------MPNDRQE---ASSFSDSSTSRRV--------VHSDEE----
pt026202_POPTR_ MDVFCSYSDQNPIGSMSLLSVLDEQECSYSSVLSDSSITSSVTKGVQPGAIFSDEE----
                                              * :*:               . ** *    

AT4G25490.1     DYCPTLATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTA
pt029739_POPTR_ ---VLLATSFPKKRAGRRIFRETRHPVFRGVRKRNGNKWVCEMREPNKKSRIWLGTYPTP
pt026202_POPTR_ ---VILASRNPKKRAGRKKFRETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTA
                     **:  *** ***: *******::****:**..***.*:******:******: *.

AT4G25490.1     EMAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAALAFQDETCDTT
pt029739_POPTR_ EMAARAHDVAALALRGKSACLNFADSAWRLPVPVSKDSKDITRAANEAAELFRPQ----E
pt026202_POPTR_ DMAARAHDVAALALRGRSACLNFADSAWRLPTPASSDAKDIQKAAAEAAEAFRPE----G
                :***************:*************  * *. :*** :** ***  *: :     

AT4G25490.1     TTNHGLDMEETMVEAIYTPEQSEGAFYMDEETMFGMPTLLDNMAEGMLLPPPSVQWNHN-
pt029739_POPTR_ FGGHPAKQQDSNAEAVFAMPGENDVFF--EEAVFDMPGLLVDMAEGLLLSPPRYVRNDC-
pt026202_POPTR_ SLGVELTRTGDEVEKV-AGTAAGDVFYMDDDADFGMPGLLANIAEGMLLPPP----NCCG
                  .         .* : :     ..*:  ::: *.** ** ::***:**.**    *   

AT4G25490.1     YDG--------EGDGDVSLWSY--
pt029739_POPTR_ ----NDLDHMENG-SDLSLWSY--
pt026202_POPTR_ YSGGDSLDNMENNDTDMSLWSFSV
                           :.  *:****:
BoxShade v3.31 C (beta, 970507) Output
AT4G25490.1     M N S F - - - - - - - - - - - - - - - - - - - - - - - - - - S A F S E M - - - - - - - - - - - - - - F G S D Y E P Q G G
pt029739_POPTR_    - - - - - - - - - - - - - - - - - - - M P N D R Q E - - - A S S F S D S S T S R R V - - - - - - - - V H S D E E - - - -
pt026202_POPTR_    M D V F C S Y S D Q N P I G S M S L L S V L D E Q E C S Y S S V L S D S S I T S S V T K G V Q P G A I F S D E E - - - -
 
AT4G25490.1     D Y C P T L A T S C P K K P A G R K K F R E T R H P I Y R G V R Q R N S G K W V S E V R E P N K K T R I W L G T F Q T A
pt029739_POPTR_    - - - V L L A T S F P K K R A G R R I F R E T R H P V F R G V R K R N G N K W V C E M R E P N K K S R I W L G T Y P T P
pt026202_POPTR_    - - - V I L A S R N P K K R A G R K K F R E T R H P V Y R G V R R R N S G K W V C E V R E P N K K S R I W L G T F P T A
 
AT4G25490.1     E M A A R A H D V A A L A L R G R S A C L N F A D S A W R L R I P E S T C A K D I Q K A A A E A A L A F Q D E T C D T T
pt029739_POPTR_    E M A A R A H D V A A L A L R G K S A C L N F A D S A W R L P V P V S K D S K D I T R A A N E A A E L F R P Q - - - - E
pt026202_POPTR_    D M A A R A H D V A A L A L R G R S A C L N F A D S A W R L P T P A S S D A K D I Q K A A A E A A E A F R P E - - - - G
 
AT4G25490.1     T T N H G L D M E E T M V E A I Y T P E Q S E G A F Y M D E E T M F G M P T L L D N M A E G M L L P P P S V Q W N H N -
pt029739_POPTR_    F G G H P A K Q Q D S N A E A V F A M P G E N D V F F - - E E A V F D M P G L L V D M A E G L L L S P P R Y V R N D C -
pt026202_POPTR_    S L G V E L T R T G D E V E K V - A G T A A G D V F Y M D D D A D F G M P G L L A N I A E G M L L P P P - - - - N C C G
 
AT4G25490.1     Y D G - - - - - - - - E G D G D V S L W S Y - -
pt029739_POPTR_    - - - - N D L D H M E N G - S D L S L W S Y - -
pt026202_POPTR_    Y S G G D S L D N M E N N D T D M S L W S F S V
 
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