fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G28500.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt003226 not found in 299aa AT4G28500.1 1st_1st 0.690391459 Ia
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G28500.1     MTWCNDRSDVQTVERIIPSPGAAESPVASLPVSCH-KTCPSCGHNFKFHEQAGIHDLPGL
pt003226_POPTR_ MTWCNDCNDVQTIERSSPPPCNA-SVIAQRHKECLIRSCPSCGHQIKCQDQARIHDLPGL
                ****** .****:**  *.*  * * :*.   .*  ::******::* ::** *******

AT4G28500.1     PAGVKFDPTDQEVLEHLEGKVRDDAKKLHPLIDEFIRTIDGENGICYTHPEKLPGVNKDG
pt003226_POPTR_ PAGVKFDPTDQELLEHLEGKVKSDTRKVHPLIDEFIPTIDGENGICYTHPEKLPGVSKDG
                ************:********:.*::*:******** *******************.***

AT4G28500.1     TVRHFFHRPSKAYTTGTRKRRKVHTDSDVGGETRWHKTGKTRPVLAGGRVRGYKKILVLY
pt003226_POPTR_ LIRHFFHRPSKAYTTGTRKRRKVHTDTE-GGETRWHKTGKTRPVLVGGKVKGYKKILVLY
                 :************************:: ****************.**:*:*********

AT4G28500.1     TNYGKQKKPEKTNWVMHQYHLGTSEEEKEGELVVSKVFYQTQPRQCGGSVAAAATAKDRP
pt003226_POPTR_ TNYGKQRKPEKTNWVMHQYHLGNNEEEKDGELVVSKVFYQTQPRQCGSLIKDSVSVPSKL
                ******:***************..****:******************. :  :.:. .: 

AT4G28500.1     YLHGLGGGGGRHLHYHLHHNNGNGKSNGSGGTAGAGEYYHNIPAIISFNQTG--------
pt003226_POPTR_ KVQSSG------------HEGSNLKNSTT-----LVEYYHP-SSFISFDQSGQNRSTNPN
                 ::. *            *:..* *.. :       ****  .::***:*:*        

AT4G28500.1     -----IQNHLVHDSQPFIP
pt003226_POPTR_ PPQQLLSHFAVHDGSSFIP
                     :.:. ***...***
BoxShade v3.31 C (beta, 970507) Output
AT4G28500.1     M T W C N D R S D V Q T V E R I I P S P G A A E S P V A S L P V S C H - K T C P S C G H N F K F H E Q A G I H D L P G L
pt003226_POPTR_    M T W C N D C N D V Q T I E R S S P P P C N A - S V I A Q R H K E C L I R S C P S C G H Q I K C Q D Q A R I H D L P G L
 
AT4G28500.1     P A G V K F D P T D Q E V L E H L E G K V R D D A K K L H P L I D E F I R T I D G E N G I C Y T H P E K L P G V N K D G
pt003226_POPTR_    P A G V K F D P T D Q E L L E H L E G K V K S D T R K V H P L I D E F I P T I D G E N G I C Y T H P E K L P G V S K D G
 
AT4G28500.1     T V R H F F H R P S K A Y T T G T R K R R K V H T D S D V G G E T R W H K T G K T R P V L A G G R V R G Y K K I L V L Y
pt003226_POPTR_    L I R H F F H R P S K A Y T T G T R K R R K V H T D T E - G G E T R W H K T G K T R P V L V G G K V K G Y K K I L V L Y
 
AT4G28500.1     T N Y G K Q K K P E K T N W V M H Q Y H L G T S E E E K E G E L V V S K V F Y Q T Q P R Q C G G S V A A A A T A K D R P
pt003226_POPTR_    T N Y G K Q R K P E K T N W V M H Q Y H L G N N E E E K D G E L V V S K V F Y Q T Q P R Q C G S L I K D S V S V P S K L
 
AT4G28500.1     Y L H G L G G G G G R H L H Y H L H H N N G N G K S N G S G G T A G A G E Y Y H N I P A I I S F N Q T G - - - - - - - -
pt003226_POPTR_    K V Q S S G - - - - - - - - - - - - H E G S N L K N S T T - - - - - L V E Y Y H P - S S F I S F D Q S G Q N R S T N P N
 
AT4G28500.1     - - - - - I Q N H L V H D S Q P F I P
pt003226_POPTR_    P P Q Q L L S H F A V H D G S S F I P
 
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