fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G28530.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt000039 not found in 285aa AT4G28530.1 1st_1st 0.450847457 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G28530.1     MGLKDIGSKLPPGFRFHPSDEELVCHYLCNKIRAKSDHGDVDDDDDDVDEALKGSTDLVE
pt000039_POPTR_ MGLRDIGATLPPGFRFYPSDEELVCHYLYKKITN--------------EQVLKGT--LVE
                ***:***:.*******:*********** :**                ::.***:  ***

AT4G28530.1     IDLHICEPWELPDVAKLNAKEWYFFSFRDRKYATGYRTNRATVSGYWKATGKDRTVMDPR
pt000039_POPTR_ VDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTTGYWKATGKDRTVLDPT
                :*** ****:**:******.***************:******.:************:** 

AT4G28530.1     TRQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLECPNIPPKEDWVLCRVFNKGRDSSLQD
pt000039_POPTR_ TREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMHPKEDWVLCRVFHKCKAE----
                **::******************** ********* *:: ***********:* : .    

AT4G28530.1     NNYYNNDNQTQRLEVNDAPDLNYNNQLPPLLSSPPHNHQHEKMKIQVCDQWEQLMKQPSR
pt000039_POPTR_ ---------------------DYNAKFSP-----------------------QLMFETTT
                                     :** ::.*                       *** :.: 

AT4G28530.1     TTG------HPYHHHCHHQTIACGWEQMMIGSLSS-PSSHGPDHESLLNLLYV--DNNNS
pt000039_POPTR_ SSGTVNLAASPL--STDHQTLPCGYQQMT--SLSSNPPHQNQDQSSLLNLLQLSQDRNAN
                ::*       *     .***:.**::**   **** *. :. *:.****** :  *.* .

AT4G28530.1     VNISGDHHQNYEKILLSSLD-----MTSLDHDKTCMGSSSDGGMVSDLHMECGGLSFETE
pt000039_POPTR_ PNISTD-------ISSKAVDDYAFLWDDMNLEETSLG---DGVLASNLE----DMRFEID
                 *** *       *  .::*       .:: ::*.:*   ** :.*:*.    .: ** :

AT4G28530.1     -NILAFQ
pt000039_POPTR_ HNSMVFI
                 * :.*
BoxShade v3.31 C (beta, 970507) Output
AT4G28530.1     M G L K D I G S K L P P G F R F H P S D E E L V C H Y L C N K I R A K S D H G D V D D D D D D V D E A L K G S T D L V E
pt000039_POPTR_    M G L R D I G A T L P P G F R F Y P S D E E L V C H Y L Y K K I T N - - - - - - - - - - - - - - E Q V L K G T - - L V E
 
AT4G28530.1     I D L H I C E P W E L P D V A K L N A K E W Y F F S F R D R K Y A T G Y R T N R A T V S G Y W K A T G K D R T V M D P R
pt000039_POPTR_    V D L H T C E P W Q L P E V A K L N A T E W Y F F S F R D R K Y A T G F R T N R A T T T G Y W K A T G K D R T V L D P T
 
AT4G28530.1     T R Q L V G M R K T L V F Y R N R A P N G I K T T W I M H E F R L E C P N I P P K E D W V L C R V F N K G R D S S L Q D
pt000039_POPTR_    T R E V V G M R K T L V F Y R N R A P N G I K T G W I M H E F R L E T P H M H P K E D W V L C R V F H K C K A E - - - -
 
AT4G28530.1     N N Y Y N N D N Q T Q R L E V N D A P D L N Y N N Q L P P L L S S P P H N H Q H E K M K I Q V C D Q W E Q L M K Q P S R
pt000039_POPTR_    - - - - - - - - - - - - - - - - - - - - - D Y N A K F S P - - - - - - - - - - - - - - - - - - - - - - - Q L M F E T T T
 
AT4G28530.1     T T G - - - - - - H P Y H H H C H H Q T I A C G W E Q M M I G S L S S - P S S H G P D H E S L L N L L Y V - - D N N N S
pt000039_POPTR_    S S G T V N L A A S P L - - S T D H Q T L P C G Y Q Q M T - - S L S S N P P H Q N Q D Q S S L L N L L Q L S Q D R N A N
 
AT4G28530.1     V N I S G D H H Q N Y E K I L L S S L D - - - - - M T S L D H D K T C M G S S S D G G M V S D L H M E C G G L S F E T E
pt000039_POPTR_    P N I S T D - - - - - - - I S S K A V D D Y A F L W D D M N L E E T S L G - - - D G V L A S N L E - - - - D M R F E I D
 
AT4G28530.1     - N I L A F Q
pt000039_POPTR_    H N S M V F I
 
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