fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G28640.1 SPIGNELELGLTLSLG at 32/246 in AT4G28640.1
SPIGNELELGLTLSLG at 32/302 in AT4G28640.2
SPIGNELELGLTLSLG at 32/250 in AT4G28640.3
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt040422 SPDEGELELGLGLSLG in 39/289 AT4G28640.1 1st_1st 0.458612975 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G28640.1     MEGGSASGSA------SALSNDENLVVSCEDSSSPIGNELELGLTLSLGRK------GYR
pt040422_POPTR_ MQGGFLGGGSGGSVCMSTVSMEDNVLMSSEDSSSPDEGELELGLGLSLGGASGFKDFGQR
                *:**  .*.:      *::* ::*:::*.******  .****** ****        * *

AT4G28640.1     DCRVYAD-----------------DSSSSSSSSSLSRASVIAGIKRTADSMAATSG---Q
pt040422_POPTR_ SSQQYARILTAKDLPSKVSSSSCCSSTTSSSSSTLSRANATAGTKRAADSVSASNGAASQ
                ..: **                  .*::*****:****.. ** **:***::*:.*   *

AT4G28640.1     VVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRS-------------DSTKMRN
pt040422_POPTR_ VVGWPPIRSHRMHIMVNQAKSQATEEFN-----SMNKRKNAVEEKVGNKNINIGNTKTRT
                ********::**: ******:.***: *     ::**.:.             ..** *.

AT4G28640.1     SMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPV-KIL
pt040422_POPTR_ SLFVKVNMDGTLIGRKVDLNAHGCYETLAQALENMFLR----TTTTLNMARLSTPEHKIM
                *:****.***  ****:***** ***:*:::**:***:    : *  . .::.**  **:

AT4G28640.1     PD---------GSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATGKAQMI
pt040422_POPTR_ IDAKRHSQLLGGSSEFVLTYEDKDGDWMLVGDVPWGMFISSVKRLRIMRMSEATGLGK--
                 *         *** :*******:***************.**:*****: ***** .:  

AT4G28640.1     L
pt040422_POPTR_ -
BoxShade v3.31 C (beta, 970507) Output
AT4G28640.1     M E G G S A S G S A - - - - - - S A L S N D E N L V V S C E D S S S P I G N E L E L G L T L S L G R K - - - - - - G Y R
pt040422_POPTR_    M Q G G F L G G G S G G S V C M S T V S M E D N V L M S S E D S S S P D E G E L E L G L G L S L G G A S G F K D F G Q R
 
AT4G28640.1     D C R V Y A D - - - - - - - - - - - - - - - - - D S S S S S S S S S L S R A S V I A G I K R T A D S M A A T S G - - - Q
pt040422_POPTR_    S S Q Q Y A R I L T A K D L P S K V S S S S C C S S T T S S S S S T L S R A N A T A G T K R A A D S V S A S N G A A S Q
 
AT4G28640.1     V V G W P P I R T Y R M N S M V N Q A K A S A T E D P N L E I S Q A V N K N R S - - - - - - - - - - - - - D S T K M R N
pt040422_POPTR_    V V G W P P I R S H R M H I M V N Q A K S Q A T E E F N - - - - - S M N K R K N A V E E K V G N K N I N I G N T K T R T
 
AT4G28640.1     S M F V K V T M D G I P I G R K I D L N A H K C Y E S L S N T L E E M F L K P K L G S R T L E T D G H M E T P V - K I L
pt040422_POPTR_    S L F V K V N M D G T L I G R K V D L N A H G C Y E T L A Q A L E N M F L R - - - - T T T T L N M A R L S T P E H K I M
 
AT4G28640.1     P D - - - - - - - - - G S S G L V L T Y E D K E G D W M L V G D V P W G M F I G S V R R L R I M K T S E A T G K A Q M I
pt040422_POPTR_    I D A K R H S Q L L G G S S E F V L T Y E D K D G D W M L V G D V P W G M F I S S V K R L R I M R M S E A T G L G K - -
 
AT4G28640.1     L
pt040422_POPTR_    -
 
0