Input
| Putative repression domain
|
|
AT4G28640.1 |
SPIGNELELGLTLSLG at 32/246 in AT4G28640.1 |
|
SPIGNELELGLTLSLG at 32/302 in AT4G28640.2 |
SPIGNELELGLTLSLG at 32/250 in AT4G28640.3 |
Ortholog
| Putative repression domain
| Reverse top hit
| Relation
| Blast score ratio
| Type
|
Pt040421 |
SPDEGELELGLGLSLG in 39/290 |
AT4G28640.2 |
not_not |
0.458612975 |
III |
Pt034335 |
YPVEAELELGLGLSLG in 42/303 |
AT2G33310.3 |
not_not |
0.416107382 |
III |
Pt041570 |
YPVEAELELGLSLGSG in 43/282 |
AT2G33310.3 |
not_not |
0.413870246 |
III |
Pt034336 |
YPVEAELELGLGLSLG in 42/277 |
AT2G33310.3 |
not_not |
0.409395973 |
III |
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.
CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)
AT4G28640.1 -MEGG-----SASGSA------SALSNDENLVVSCEDSSSPIGNELELGLTL---SLGRK
pt040421_POPTR_ -MQGG-----FLGGGSGGSVCMSTVSMEDNVLMSSEDSSSPDEGELELGLGL---SLGGA
pt034335_POPTR_ MMEGCLGLL-GGGGSSGASTNKSTLSKVE--VIEAEASSYPVEAELELGLGL---SLGSG
pt041570_POPTR_ MMAGGLGSLGGGGGSSGASTNDSTMSKVE--VVEAEASSYPVEAELELGLSLGSGGRGGG
pt034336_POPTR_ MMEGCLGLL-GGGGSSGASTNKSTLSKVE--VIEAEASSYPVEAELELGLGL---SLGSG
* * .*.: *::* : ::..* ** * ****** * . *
AT4G28640.1 ------GYRDCR-VYAD-----------------DSSSSSSSSSLSRASVIAGIKRTADS
pt040421_POPTR_ SGFKDFGQRSSQ-QYARILTAKDLPSKVSSSSCCSSTTSSSSSTLSRANATAGTKRAADS
pt034335_POPTR_ GGGK--GKANAWGECGRILTAKDFPSVVSQPQ--RPNNNNSMPSTCVVGAVSGTKRAADS
pt041570_POPTR_ GGGK--GKANARGERGRILTAKDFPSV----------------------------RAADS
pt034336_POPTR_ GGGK--GKANAWGECGRILTAKDFPSV----------------------------RAADS
* .. . *:***
AT4G28640.1 MAATSG------QVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRS-------
pt040421_POPTR_ VSASNGA--ASSQVVGWPPIRSHRMHIMVNQAKSQATEEFN-----SMNKRKNAVEEKV-
pt034335_POPTR_ VSHEGGSPTAGSQVVGWPPIRAYRMNSLVSQAKAARAEEEK-GIG-EKDKSKENLKKKIC
pt041570_POPTR_ VSHEGGSPTAGSQVVGWPPIRAYRMNSLVNQAKAARAEEDK-GIG-EKDISKDNLKKKIC
pt034336_POPTR_ VSHEGGSPTAGSQVVGWPPIRAYRMNSLVSQAKAARAEEEK-GIG-EKDKSKENLKKKIC
:: .* *********::**: :*.***: :*: : : :.
AT4G28640.1 --------DSTKMRNSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRT
pt040421_POPTR_ -GNKNINIGNTKTRTSLFVKVNMDGTLIGRKVDLNAHGCYETLAQALENMFLR----TTT
pt034335_POPTR_ NGNKTNATGNEKGHLG-FVKVNMDGVPIGRKVDLNAHACYETLAQALEEMFFR---STTT
pt041570_POPTR_ NGNKTSAPSNEKGHLG-FVKVNMDGIPIGRKVDLNAHACYETLAQALEEMFFR---SATT
pt034336_POPTR_ NGNKTNATGNEKGHLG-FVKVNMDGVPIGRKVDLNAHACYETLAQALEEMFFR---STTT
.. * : . ****.*** ****:***** ***:*:::**:**:: : *
AT4G28640.1 LETDGHMETPV-KILPD---------GSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRL
pt040421_POPTR_ TLNMARLSTPEHKIMIDAKRHSQLLGGSSEFVLTYEDKDGDWMLVGDVPWGMFISSVKRL
pt034335_POPTR_ INSIGGQK-PLSK-------FSKLLDGSSEFVLTYEDKEGDWMLVGDVPWGMFLTSVKRL
pt041570_POPTR_ INSIGGEKRQVTK-------PSKLLDGLSEFLLTYEDKEGDWMLVGDVPWGMFLNSVKRL
pt034336_POPTR_ INSIGGQK-PLSK-------FSKLLDGSSEFVLTYEDKEGDWMLVGDVPWGMFLTSVKRL
. . . * * * ::******:**************: **:**
AT4G28640.1 RIMKTSEATGKAQMIL-----------
pt040421_POPTR_ RIMRMSEATGLGK--------------
pt034335_POPTR_ RIMRTSEANGLAPRLQDRNEKQRSKPV
pt041570_POPTR_ RIMRTSEANGLAPRFQDRNEKQRIKPV
pt034336_POPTR_ RIMRTSEANGLAPRLQDRNEKQRSKPV
***: ***.* .
BoxShade v3.31 C (beta, 970507) Output
AT4G28640.1 |
- |
M |
E |
G |
G |
- |
- |
- |
- |
- |
S |
A |
S |
G |
S |
A |
- |
- |
- |
- |
- |
- |
S |
A |
L |
S |
N |
D |
E |
N |
L |
V |
V |
S |
C |
E |
D |
S |
S |
S |
P |
I |
G |
N |
E |
L |
E |
L |
G |
L |
T |
L |
- |
- |
- |
S |
L |
G |
R |
K |
pt040421_POPTR_ |
- |
M |
Q |
G |
G |
- |
- |
- |
- |
- |
F |
L |
G |
G |
G |
S |
G |
G |
S |
V |
C |
M |
S |
T |
V |
S |
M |
E |
D |
N |
V |
L |
M |
S |
S |
E |
D |
S |
S |
S |
P |
D |
E |
G |
E |
L |
E |
L |
G |
L |
G |
L |
- |
- |
- |
S |
L |
G |
G |
A |
pt034335_POPTR_ |
M |
M |
E |
G |
C |
L |
G |
L |
L |
- |
G |
G |
G |
G |
S |
S |
G |
A |
S |
T |
N |
K |
S |
T |
L |
S |
K |
V |
E |
- |
- |
V |
I |
E |
A |
E |
A |
S |
S |
Y |
P |
V |
E |
A |
E |
L |
E |
L |
G |
L |
G |
L |
- |
- |
- |
S |
L |
G |
S |
G |
pt041570_POPTR_ |
M |
M |
A |
G |
G |
L |
G |
S |
L |
G |
G |
G |
G |
G |
S |
S |
G |
A |
S |
T |
N |
D |
S |
T |
M |
S |
K |
V |
E |
- |
- |
V |
V |
E |
A |
E |
A |
S |
S |
Y |
P |
V |
E |
A |
E |
L |
E |
L |
G |
L |
S |
L |
G |
S |
G |
G |
R |
G |
G |
G |
pt034336_POPTR_ |
M |
M |
E |
G |
C |
L |
G |
L |
L |
- |
G |
G |
G |
G |
S |
S |
G |
A |
S |
T |
N |
K |
S |
T |
L |
S |
K |
V |
E |
- |
- |
V |
I |
E |
A |
E |
A |
S |
S |
Y |
P |
V |
E |
A |
E |
L |
E |
L |
G |
L |
G |
L |
- |
- |
- |
S |
L |
G |
S |
G |
|
AT4G28640.1 |
- |
- |
- |
- |
- |
- |
G |
Y |
R |
D |
C |
R |
- |
V |
Y |
A |
D |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
D |
S |
S |
S |
S |
S |
S |
S |
S |
S |
L |
S |
R |
A |
S |
V |
I |
A |
G |
I |
K |
R |
T |
A |
D |
S |
pt040421_POPTR_ |
S |
G |
F |
K |
D |
F |
G |
Q |
R |
S |
S |
Q |
- |
Q |
Y |
A |
R |
I |
L |
T |
A |
K |
D |
L |
P |
S |
K |
V |
S |
S |
S |
S |
C |
C |
S |
S |
T |
T |
S |
S |
S |
S |
S |
T |
L |
S |
R |
A |
N |
A |
T |
A |
G |
T |
K |
R |
A |
A |
D |
S |
pt034335_POPTR_ |
G |
G |
G |
K |
- |
- |
G |
K |
A |
N |
A |
W |
G |
E |
C |
G |
R |
I |
L |
T |
A |
K |
D |
F |
P |
S |
V |
V |
S |
Q |
P |
Q |
- |
- |
R |
P |
N |
N |
N |
N |
S |
M |
P |
S |
T |
C |
V |
V |
G |
A |
V |
S |
G |
T |
K |
R |
A |
A |
D |
S |
pt041570_POPTR_ |
G |
G |
G |
K |
- |
- |
G |
K |
A |
N |
A |
R |
G |
E |
R |
G |
R |
I |
L |
T |
A |
K |
D |
F |
P |
S |
V |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
R |
A |
A |
D |
S |
pt034336_POPTR_ |
G |
G |
G |
K |
- |
- |
G |
K |
A |
N |
A |
W |
G |
E |
C |
G |
R |
I |
L |
T |
A |
K |
D |
F |
P |
S |
V |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
R |
A |
A |
D |
S |
|
AT4G28640.1 |
M |
A |
A |
T |
S |
G |
- |
- |
- |
- |
- |
- |
Q |
V |
V |
G |
W |
P |
P |
I |
R |
T |
Y |
R |
M |
N |
S |
M |
V |
N |
Q |
A |
K |
A |
S |
A |
T |
E |
D |
P |
N |
L |
E |
I |
S |
Q |
A |
V |
N |
K |
N |
R |
S |
- |
- |
- |
- |
- |
- |
- |
pt040421_POPTR_ |
V |
S |
A |
S |
N |
G |
A |
- |
- |
A |
S |
S |
Q |
V |
V |
G |
W |
P |
P |
I |
R |
S |
H |
R |
M |
H |
I |
M |
V |
N |
Q |
A |
K |
S |
Q |
A |
T |
E |
E |
F |
N |
- |
- |
- |
- |
- |
S |
M |
N |
K |
R |
K |
N |
A |
V |
E |
E |
K |
V |
- |
pt034335_POPTR_ |
V |
S |
H |
E |
G |
G |
S |
P |
T |
A |
G |
S |
Q |
V |
V |
G |
W |
P |
P |
I |
R |
A |
Y |
R |
M |
N |
S |
L |
V |
S |
Q |
A |
K |
A |
A |
R |
A |
E |
E |
E |
K |
- |
G |
I |
G |
- |
E |
K |
D |
K |
S |
K |
E |
N |
L |
K |
K |
K |
I |
C |
pt041570_POPTR_ |
V |
S |
H |
E |
G |
G |
S |
P |
T |
A |
G |
S |
Q |
V |
V |
G |
W |
P |
P |
I |
R |
A |
Y |
R |
M |
N |
S |
L |
V |
N |
Q |
A |
K |
A |
A |
R |
A |
E |
E |
D |
K |
- |
G |
I |
G |
- |
E |
K |
D |
I |
S |
K |
D |
N |
L |
K |
K |
K |
I |
C |
pt034336_POPTR_ |
V |
S |
H |
E |
G |
G |
S |
P |
T |
A |
G |
S |
Q |
V |
V |
G |
W |
P |
P |
I |
R |
A |
Y |
R |
M |
N |
S |
L |
V |
S |
Q |
A |
K |
A |
A |
R |
A |
E |
E |
E |
K |
- |
G |
I |
G |
- |
E |
K |
D |
K |
S |
K |
E |
N |
L |
K |
K |
K |
I |
C |
|
AT4G28640.1 |
- |
- |
- |
- |
- |
- |
- |
- |
D |
S |
T |
K |
M |
R |
N |
S |
M |
F |
V |
K |
V |
T |
M |
D |
G |
I |
P |
I |
G |
R |
K |
I |
D |
L |
N |
A |
H |
K |
C |
Y |
E |
S |
L |
S |
N |
T |
L |
E |
E |
M |
F |
L |
K |
P |
K |
L |
G |
S |
R |
T |
pt040421_POPTR_ |
- |
G |
N |
K |
N |
I |
N |
I |
G |
N |
T |
K |
T |
R |
T |
S |
L |
F |
V |
K |
V |
N |
M |
D |
G |
T |
L |
I |
G |
R |
K |
V |
D |
L |
N |
A |
H |
G |
C |
Y |
E |
T |
L |
A |
Q |
A |
L |
E |
N |
M |
F |
L |
R |
- |
- |
- |
- |
T |
T |
T |
pt034335_POPTR_ |
N |
G |
N |
K |
T |
N |
A |
T |
G |
N |
E |
K |
G |
H |
L |
G |
- |
F |
V |
K |
V |
N |
M |
D |
G |
V |
P |
I |
G |
R |
K |
V |
D |
L |
N |
A |
H |
A |
C |
Y |
E |
T |
L |
A |
Q |
A |
L |
E |
E |
M |
F |
F |
R |
- |
- |
- |
S |
T |
T |
T |
pt041570_POPTR_ |
N |
G |
N |
K |
T |
S |
A |
P |
S |
N |
E |
K |
G |
H |
L |
G |
- |
F |
V |
K |
V |
N |
M |
D |
G |
I |
P |
I |
G |
R |
K |
V |
D |
L |
N |
A |
H |
A |
C |
Y |
E |
T |
L |
A |
Q |
A |
L |
E |
E |
M |
F |
F |
R |
- |
- |
- |
S |
A |
T |
T |
pt034336_POPTR_ |
N |
G |
N |
K |
T |
N |
A |
T |
G |
N |
E |
K |
G |
H |
L |
G |
- |
F |
V |
K |
V |
N |
M |
D |
G |
V |
P |
I |
G |
R |
K |
V |
D |
L |
N |
A |
H |
A |
C |
Y |
E |
T |
L |
A |
Q |
A |
L |
E |
E |
M |
F |
F |
R |
- |
- |
- |
S |
T |
T |
T |
|
AT4G28640.1 |
L |
E |
T |
D |
G |
H |
M |
E |
T |
P |
V |
- |
K |
I |
L |
P |
D |
- |
- |
- |
- |
- |
- |
- |
- |
- |
G |
S |
S |
G |
L |
V |
L |
T |
Y |
E |
D |
K |
E |
G |
D |
W |
M |
L |
V |
G |
D |
V |
P |
W |
G |
M |
F |
I |
G |
S |
V |
R |
R |
L |
pt040421_POPTR_ |
T |
L |
N |
M |
A |
R |
L |
S |
T |
P |
E |
H |
K |
I |
M |
I |
D |
A |
K |
R |
H |
S |
Q |
L |
L |
G |
G |
S |
S |
E |
F |
V |
L |
T |
Y |
E |
D |
K |
D |
G |
D |
W |
M |
L |
V |
G |
D |
V |
P |
W |
G |
M |
F |
I |
S |
S |
V |
K |
R |
L |
pt034335_POPTR_ |
I |
N |
S |
I |
G |
G |
Q |
K |
- |
P |
L |
S |
K |
- |
- |
- |
- |
- |
- |
- |
F |
S |
K |
L |
L |
D |
G |
S |
S |
E |
F |
V |
L |
T |
Y |
E |
D |
K |
E |
G |
D |
W |
M |
L |
V |
G |
D |
V |
P |
W |
G |
M |
F |
L |
T |
S |
V |
K |
R |
L |
pt041570_POPTR_ |
I |
N |
S |
I |
G |
G |
E |
K |
R |
Q |
V |
T |
K |
- |
- |
- |
- |
- |
- |
- |
P |
S |
K |
L |
L |
D |
G |
L |
S |
E |
F |
L |
L |
T |
Y |
E |
D |
K |
E |
G |
D |
W |
M |
L |
V |
G |
D |
V |
P |
W |
G |
M |
F |
L |
N |
S |
V |
K |
R |
L |
pt034336_POPTR_ |
I |
N |
S |
I |
G |
G |
Q |
K |
- |
P |
L |
S |
K |
- |
- |
- |
- |
- |
- |
- |
F |
S |
K |
L |
L |
D |
G |
S |
S |
E |
F |
V |
L |
T |
Y |
E |
D |
K |
E |
G |
D |
W |
M |
L |
V |
G |
D |
V |
P |
W |
G |
M |
F |
L |
T |
S |
V |
K |
R |
L |
|
AT4G28640.1 |
R |
I |
M |
K |
T |
S |
E |
A |
T |
G |
K |
A |
Q |
M |
I |
L |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
pt040421_POPTR_ |
R |
I |
M |
R |
M |
S |
E |
A |
T |
G |
L |
G |
K |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
pt034335_POPTR_ |
R |
I |
M |
R |
T |
S |
E |
A |
N |
G |
L |
A |
P |
R |
L |
Q |
D |
R |
N |
E |
K |
Q |
R |
S |
K |
P |
V |
pt041570_POPTR_ |
R |
I |
M |
R |
T |
S |
E |
A |
N |
G |
L |
A |
P |
R |
F |
Q |
D |
R |
N |
E |
K |
Q |
R |
I |
K |
P |
V |
pt034336_POPTR_ |
R |
I |
M |
R |
T |
S |
E |
A |
N |
G |
L |
A |
P |
R |
L |
Q |
D |
R |
N |
E |
K |
Q |
R |
S |
K |
P |
V |
|
|