fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G28640.1 SPIGNELELGLTLSLG at 32/246 in AT4G28640.1
SPIGNELELGLTLSLG at 32/302 in AT4G28640.2
SPIGNELELGLTLSLG at 32/250 in AT4G28640.3
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm035802 CPEESELELGLGLSLS in 24/291 AT2G33310.3 not_not 0.418344519 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G28640.1     MEGGSASGSASALSNDENLVVSCEDSSSPIGNELELGLTLSL----GRKGYRD-------
gm035802_Glyma1 ---------MSTVSKDDNLVLSSEDSSCPEESELELGLGLSLSSGPSSKSHHHHVHAPTT
                          *::*:*:***:*.****.*  .****** ***    . *.::.       

AT4G28640.1     --CRVY--------ADDSSSSSSSSSLSRASVIAGIKR-TADSMAATS--GQVVGWPPIR
gm035802_Glyma1 LYARIYTAKDFPSSAAAASSSPSSSSSSSPNITAGTKRAAADSLVANNRPSQVVGWPPLR
                  .*:*        *  :***.**** * ..: ** ** :***:.*..  .*******:*

AT4G28640.1     TYRMNSMVNQAKASATEDP-------NLEISQAVNKNRSDST-------KMRNSMFVKVT
gm035802_Glyma1 TYRVNSFNSHAKSTEVFNSVAEKSKINNTVVRKTNDNDNDNNINAKEKRHLRSSLFVKVN
                ***:**: .:**:: . :.       *  : : .*.* .*..       ::*.*:****.

AT4G28640.1     MDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGH-------METPVKILP
gm035802_Glyma1 MDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTVTTCKGSNGEDYGIIIGGERHSKLL-
                *********:**.**..**:*::***:** :..  :    ::*.        *   *:* 

AT4G28640.1     DGSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATGKAQMIL---------
gm035802_Glyma1 DGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRLEENIKQRCKP
                **** :**********************:.********:****.* *  :          

AT4G28640.1     -
gm035802_Glyma1 I
BoxShade v3.31 C (beta, 970507) Output
AT4G28640.1     M E G G S A S G S A S A L S N D E N L V V S C E D S S S P I G N E L E L G L T L S L - - - - G R K G Y R D - - - - - - -
gm035802_Glyma1    - - - - - - - - - M S T V S K D D N L V L S S E D S S C P E E S E L E L G L G L S L S S G P S S K S H H H H V H A P T T
 
AT4G28640.1     - - C R V Y - - - - - - - - A D D S S S S S S S S S L S R A S V I A G I K R - T A D S M A A T S - - G Q V V G W P P I R
gm035802_Glyma1    L Y A R I Y T A K D F P S S A A A A S S S P S S S S S S S P N I T A G T K R A A A D S L V A N N R P S Q V V G W P P L R
 
AT4G28640.1     T Y R M N S M V N Q A K A S A T E D P - - - - - - - N L E I S Q A V N K N R S D S T - - - - - - - K M R N S M F V K V T
gm035802_Glyma1    T Y R V N S F N S H A K S T E V F N S V A E K S K I N N T V V R K T N D N D N D N N I N A K E K R H L R S S L F V K V N
 
AT4G28640.1     M D G I P I G R K I D L N A H K C Y E S L S N T L E E M F L K P K L G S R T L E T D G H - - - - - - - M E T P V K I L P
gm035802_Glyma1    M D G I P I G R K V D L S A H S S Y E T L A Q T L E D M F N E S T T V T T C K G S N G E D Y G I I I G G E R H S K L L -
 
AT4G28640.1     D G S S G L V L T Y E D K E G D W M L V G D V P W G M F I G S V R R L R I M K T S E A T G K A Q M I L - - - - - - - - -
gm035802_Glyma1    D G S S K F V L T Y E D K E G D W M L V G D V P W G M F L S S V R R L R I M R T S E A N G L A P R L E E N I K Q R C K P
 
AT4G28640.1     -
gm035802_Glyma1    I
 
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