fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G28640.1 SPIGNELELGLTLSLG at 32/246 in AT4G28640.1
SPIGNELELGLTLSLG at 32/302 in AT4G28640.2
SPIGNELELGLTLSLG at 32/250 in AT4G28640.3
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm026737 CPEESELELGLGLSLS in 24/287 AT2G33310.3 1st_not 0.422818791 II
Gm035802 CPEESELELGLGLSLS in 24/291 AT2G33310.3 not_not 0.418344519 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G28640.1     MEGGSASGSASALSNDENLVVSCEDSSSPIGNELELGLTLSL----GRKGYR--------
gm026737_Glyma1 ---------MSTVSKDDNLALSSEDSSCPEESELELGLGLSLSSGSSSKSHHHH------
gm035802_Glyma1 ---------MSTVSKDDNLVLSSEDSSCPEESELELGLGLSLSSGPSSKSHHHHVHAPTT
                          *::*:*:**.:*.****.*  .****** ***    . *.::        

AT4G28640.1     -DCRVY-----------ADDSSSSSSSSSLSRASVIAGIKR-TADSMAATS--GQVVGWP
gm026737_Glyma1 -HARIYTAKDFPSSAAAAAAAASSPSSSSSSPNNITAGTKRAAADSLVANNRPSQVVGWP
gm035802_Glyma1 LYARIYTAKDFPSS---AAAASSSPSSSSSSSPNITAGTKRAAADSLVANNRPSQVVGWP
                  .*:*           *  ::**.**** *  .: ** ** :***:.*..  .******

AT4G28640.1     PIRTYRMNSMVNQAKASATEDPNLE-------ISQAVNKNRSDST-------KMRNSMFV
gm026737_Glyma1 PLRTYRVNSFNSHAKSTEVFNSVAEKSKTDNTVARKTNDNGNDNNINAKEKRHLRSSLFV
gm035802_Glyma1 PLRTYRVNSFNSHAKSTEVFNSVAEKSKINNTVVRKTNDNDNDNNINAKEKRHLRSSLFV
                *:****:**: .:**:: . :.  *       : : .*.* .*..       ::*.*:**

AT4G28640.1     KVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGH-------METPVK
gm026737_Glyma1 KVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTVTTCKGSNGEDYGFIIGGERHSK
gm035802_Glyma1 KVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTVTTCKGSNGEDYGIIIGGERHSK
                **.*********:**.**..**:*::***:** :..  :    ::*.        *   *

AT4G28640.1     ILPDGSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATGKAQMIL------
gm026737_Glyma1 LL-DGSSKFVLTYEDKEGDWMLVGDVPWGMFFSSVRRLRIMRTSEANGLAPRLEENIKKR
gm035802_Glyma1 LL-DGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRLEENIKQR
                :* **** :**********************:.********:****.* *  :       

AT4G28640.1     ----
gm026737_Glyma1 CKPI
gm035802_Glyma1 CKPI
BoxShade v3.31 C (beta, 970507) Output
AT4G28640.1     M E G G S A S G S A S A L S N D E N L V V S C E D S S S P I G N E L E L G L T L S L - - - - G R K G Y R - - - - - - - -
gm026737_Glyma1    - - - - - - - - - M S T V S K D D N L A L S S E D S S C P E E S E L E L G L G L S L S S G S S S K S H H H H - - - - - -
gm035802_Glyma1    - - - - - - - - - M S T V S K D D N L V L S S E D S S C P E E S E L E L G L G L S L S S G P S S K S H H H H V H A P T T
 
AT4G28640.1     - D C R V Y - - - - - - - - - - - A D D S S S S S S S S S L S R A S V I A G I K R - T A D S M A A T S - - G Q V V G W P
gm026737_Glyma1    - H A R I Y T A K D F P S S A A A A A A A A S S P S S S S S S P N N I T A G T K R A A A D S L V A N N R P S Q V V G W P
gm035802_Glyma1    L Y A R I Y T A K D F P S S - - - A A A A S S S P S S S S S S S P N I T A G T K R A A A D S L V A N N R P S Q V V G W P
 
AT4G28640.1     P I R T Y R M N S M V N Q A K A S A T E D P N L E - - - - - - - I S Q A V N K N R S D S T - - - - - - - K M R N S M F V
gm026737_Glyma1    P L R T Y R V N S F N S H A K S T E V F N S V A E K S K T D N T V A R K T N D N G N D N N I N A K E K R H L R S S L F V
gm035802_Glyma1    P L R T Y R V N S F N S H A K S T E V F N S V A E K S K I N N T V V R K T N D N D N D N N I N A K E K R H L R S S L F V
 
AT4G28640.1     K V T M D G I P I G R K I D L N A H K C Y E S L S N T L E E M F L K P K L G S R T L E T D G H - - - - - - - M E T P V K
gm026737_Glyma1    K V N M D G I P I G R K V D L S A H S S Y E T L A Q T L E D M F N E S T T V T T C K G S N G E D Y G F I I G G E R H S K
gm035802_Glyma1    K V N M D G I P I G R K V D L S A H S S Y E T L A Q T L E D M F N E S T T V T T C K G S N G E D Y G I I I G G E R H S K
 
AT4G28640.1     I L P D G S S G L V L T Y E D K E G D W M L V G D V P W G M F I G S V R R L R I M K T S E A T G K A Q M I L - - - - - -
gm026737_Glyma1    L L - D G S S K F V L T Y E D K E G D W M L V G D V P W G M F F S S V R R L R I M R T S E A N G L A P R L E E N I K K R
gm035802_Glyma1    L L - D G S S K F V L T Y E D K E G D W M L V G D V P W G M F L S S V R R L R I M R T S E A N G L A P R L E E N I K Q R
 
AT4G28640.1     - - - -
gm026737_Glyma1    C K P I
gm035802_Glyma1    C K P I
 
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