fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G29080.1 NFKATELRLGLPGSES at 43/305 in AT4G29080.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt005605 NLKATELRLGLPGSDS in 44/307 AT4G29080.1 not_1st 0.502555366 II
Pt030401 NMKETELRLGLPGSQS in 66/335 AT4G29080.1 not_1st 0.494037478 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G29080.1     MSVSVAAEHDYIGL-SEFPTMEA--------TTMSDKTKT---------------RDNNN
pt030401_POPTR_ -MYSIPKEHDYIGL-SETPSMENISEKLSSSSTSSSTLSTEEKNNSSSSNSNNNNKNNNT
pt005605_POPTR_ --MSMPLEHDYIGISSEVSSMEN------TSGTDTINIST----------------TASK
                   *:. ******: ** .:**          * : . .*                  ..

AT4G29080.1     GLNFKATELRLGLPGSESPER---VDSRFLAL-------NKSSC----P----VSGAKRV
pt030401_POPTR_ SLNMKETELRLGLPGSQSPERKPTVPAAGVSLVGKDIDTNNTNAYSLIPVKNLVSGAKRV
pt005605_POPTR_ GLNLKATELRLGLPGSDSPERGNENQQLGFSL-------NNNNSKD----KSFVSGARRG
                .**:* **********:****        .:*       *:...         ****:* 

AT4G29080.1     FSDAIN-DSNKWVFSPGSTTATGDVGSGSGPRTS-VVKDGKSTTFTKPAVP-VKEKKSS-
pt030401_POPTR_ FSDAIDGSTGKWVFSG---------GDNGNPQKS-RVAGPAKKDVAQSPKP-VQEKNSQV
pt005605_POPTR_ FSVAIHGGSANWVFSG---------NAGSDPNFSLRGANSGKEGFPHSSKPVVQENKSQV
                ** **. .: :****          . ...*. *    .  .  ..:.. * *:*::*. 

AT4G29080.1     --------ATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCL
pt030401_POPTR_ AAANEN--SSAPAAKTQVVGWPPIRSFRKNTMASSLAK---NN---EDVDGKSG--YGYL
pt005605_POPTR_ DGANTNGHGAAPASKAQVVGWPPIRSFRKNTMASHLSK---ND---DGAEVKSG--SGCL
                        .:***:*:**************:***  ::   *:   : .: ***     *

AT4G29080.1     YVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTD
pt030401_POPTR_ YVKVSMDGAPYLRKVDLKTYGNYLELSSALEKMFGCFTIGQCGSHGLAARDGLTESCLKD
pt005605_POPTR_ YVKVSMDGAPYLRKVDLKTFGSYMELSSALEKMFSCFTIGQCGSHVVPGQDGLSESRLMD
                ******:*******:****: .*:**********.****** ***   .:***.** * *

AT4G29080.1     LLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSRN
pt030401_POPTR_ -LHGSEYVLTFEDKDGDWMLVGDVPWDMFTDSCRRLRIMKGSEAIGLAPRAMEKCKNRN
pt005605_POPTR_ LLHGSEYVLTYEDKDNDWMLVGDVPWKMFTDSCRRLRIMKGSEAIGLAPRAMEKCKSRN
                 *:*****:*:****.**********.**  **::*****.*********.****:.**
BoxShade v3.31 C (beta, 970507) Output
AT4G29080.1     M S V S V A A E H D Y I G L - S E F P T M E A - - - - - - - - T T M S D K T K T - - - - - - - - - - - - - - - R D N N N
pt030401_POPTR_    - M Y S I P K E H D Y I G L - S E T P S M E N I S E K L S S S S T S S S T L S T E E K N N S S S S N S N N N N K N N N T
pt005605_POPTR_    - - M S M P L E H D Y I G I S S E V S S M E N - - - - - - T S G T D T I N I S T - - - - - - - - - - - - - - - - T A S K
 
AT4G29080.1     G L N F K A T E L R L G L P G S E S P E R - - - V D S R F L A L - - - - - - - N K S S C - - - - P - - - - V S G A K R V
pt030401_POPTR_    S L N M K E T E L R L G L P G S Q S P E R K P T V P A A G V S L V G K D I D T N N T N A Y S L I P V K N L V S G A K R V
pt005605_POPTR_    G L N L K A T E L R L G L P G S D S P E R G N E N Q Q L G F S L - - - - - - - N N N N S K D - - - - K S F V S G A R R G
 
AT4G29080.1     F S D A I N - D S N K W V F S P G S T T A T G D V G S G S G P R T S - V V K D G K S T T F T K P A V P - V K E K K S S -
pt030401_POPTR_    F S D A I D G S T G K W V F S G - - - - - - - - - G D N G N P Q K S - R V A G P A K K D V A Q S P K P - V Q E K N S Q V
pt005605_POPTR_    F S V A I H G G S A N W V F S G - - - - - - - - - N A G S D P N F S L R G A N S G K E G F P H S S K P V V Q E N K S Q V
 
AT4G29080.1     - - - - - - - - A T A P A S K A Q V V G W P P I R S F R K N S M A S S Q S Q K P G N N S E T E E A E A K S G P E Q P C L
pt030401_POPTR_    A A A N E N - - S S A P A A K T Q V V G W P P I R S F R K N T M A S S L A K - - - N N - - - E D V D G K S G - - Y G Y L
pt005605_POPTR_    D G A N T N G H G A A P A S K A Q V V G W P P I R S F R K N T M A S H L S K - - - N D - - - D G A E V K S G - - S G C L
 
AT4G29080.1     Y V K V S M E G A P Y L R K I D L K T Y K S Y L E L S S A L E K M F S C F T I G Q F G S H G G C G R D G L N E S R L T D
pt030401_POPTR_    Y V K V S M D G A P Y L R K V D L K T Y G N Y L E L S S A L E K M F G C F T I G Q C G S H G L A A R D G L T E S C L K D
pt005605_POPTR_    Y V K V S M D G A P Y L R K V D L K T F G S Y M E L S S A L E K M F S C F T I G Q C G S H V V P G Q D G L S E S R L M D
 
AT4G29080.1     L L R G S E Y V V T Y E D K D S D W M L V G D V P W E M F I C S C K K L R I M K S S E A I G L A P R V M E K C R S R N
pt030401_POPTR_    - L H G S E Y V L T F E D K D G D W M L V G D V P W D M F T D S C R R L R I M K G S E A I G L A P R A M E K C K N R N
pt005605_POPTR_    L L H G S E Y V L T Y E D K D N D W M L V G D V P W K M F T D S C R R L R I M K G S E A I G L A P R A M E K C K S R N
 
0