fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G29080.1 NFKATELRLGLPGSES at 43/305 in AT4G29080.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt011954 NLKETELRLGLPGYQS in 60/349 AT4G29080.1 1st_1st 0.509369676 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G29080.1     MSVSVAAEHDYIGLSEFPTME---------ATTMSDKTKTRDNNN--------GLNFKAT
pt011954_POPTR_ MS-SIPKEHDYIGLSETPSMEKISDKLSSSSSTLSTEENINSNSNSNSNSTNTSLNLKET
                ** *:. ********* *:**         ::*:* : : ..*.*        .**:* *

AT4G29080.1     ELRLGLPGSESPER---------------VDSRFLALNKSSCP-------VSGAKRVFSD
pt011954_POPTR_ ELRLGLPGYQSPERKLTLPAAGVSLFGKDIDTN----NTNGYPLRPLKNLVSGTKRGFSD
                ******** :****               :*:.    *... *       ***:** ***

AT4G29080.1     AI-NDSNKWVFSPGSTTATGDVGSGS---GPR--------TSVVKDGKSTTFTKPAVPVK
pt011954_POPTR_ AIVGSSGKWVFS-GSNGSEVDLGKGAILFSPRGDNGNSQKSCVAGPAKKDDVAQSPKPVQ
                ** ..*.***** **. :  *:*.*:   .**        :.*.  .*.  .::.. **:

AT4G29080.1     EKKS-------SATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPE
pt011954_POPTR_ EKISQVAAANENSSAPAAKAQVVGWPPIRSFRKNTMASSLVK---NN---EDVEGKSG--
                ** *       .::***:****************:****  :   **   *:.*.***  

AT4G29080.1     QPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNES
pt011954_POPTR_ YGCLYVKVSMDGAPYLRKVDLKTYSNYLELSSALEKMFSCFTIGQCGSHGLRGQDGLTES
                  ********:*******:*****..******************* ****  *:***.**

AT4G29080.1     RLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCR
pt011954_POPTR_ RLKDILHGSEYVLTYEDKDGDWMLVGDVPWDMFTNSCRRLRIMKGSEAIGLAPRAMEKCK
                **.*:*:*****:******.**********:**  **::*****.*********.****:

AT4G29080.1     SRN
pt011954_POPTR_ NRN
                .**
BoxShade v3.31 C (beta, 970507) Output
AT4G29080.1     M S V S V A A E H D Y I G L S E F P T M E - - - - - - - - - A T T M S D K T K T R D N N N - - - - - - - - G L N F K A T
pt011954_POPTR_    M S - S I P K E H D Y I G L S E T P S M E K I S D K L S S S S S T L S T E E N I N S N S N S N S N S T N T S L N L K E T
 
AT4G29080.1     E L R L G L P G S E S P E R - - - - - - - - - - - - - - - V D S R F L A L N K S S C P - - - - - - - V S G A K R V F S D
pt011954_POPTR_    E L R L G L P G Y Q S P E R K L T L P A A G V S L F G K D I D T N - - - - N T N G Y P L R P L K N L V S G T K R G F S D
 
AT4G29080.1     A I - N D S N K W V F S P G S T T A T G D V G S G S - - - G P R - - - - - - - - T S V V K D G K S T T F T K P A V P V K
pt011954_POPTR_    A I V G S S G K W V F S - G S N G S E V D L G K G A I L F S P R G D N G N S Q K S C V A G P A K K D D V A Q S P K P V Q
 
AT4G29080.1     E K K S - - - - - - - S A T A P A S K A Q V V G W P P I R S F R K N S M A S S Q S Q K P G N N S E T E E A E A K S G P E
pt011954_POPTR_    E K I S Q V A A A N E N S S A P A A K A Q V V G W P P I R S F R K N T M A S S L V K - - - N N - - - E D V E G K S G - -
 
AT4G29080.1     Q P C L Y V K V S M E G A P Y L R K I D L K T Y K S Y L E L S S A L E K M F S C F T I G Q F G S H G G C G R D G L N E S
pt011954_POPTR_    Y G C L Y V K V S M D G A P Y L R K V D L K T Y S N Y L E L S S A L E K M F S C F T I G Q C G S H G L R G Q D G L T E S
 
AT4G29080.1     R L T D L L R G S E Y V V T Y E D K D S D W M L V G D V P W E M F I C S C K K L R I M K S S E A I G L A P R V M E K C R
pt011954_POPTR_    R L K D I L H G S E Y V L T Y E D K D G D W M L V G D V P W D M F T N S C R R L R I M K G S E A I G L A P R A M E K C K
 
AT4G29080.1     S R N
pt011954_POPTR_    N R N
 
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