fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G29190.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sm002406 not found in 478aa AT4G29190.1 1st_1st 0.320580474 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G29190.1     ------MMIGETRRTYPTVEIPPWPVLEELTTSEFFSPVMNSPDCSMLEALAGLQRYLPS
Sm002406_Selmo1 MDLHVGMGGGSGGNAFGSVS-------------------ADSGSCDSPTSMGALHKFLPS
                      *  *.  .:: :*.                    :* .*.   ::..*:::***

AT4G29190.1     NEPDPESYPDLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRD
Sm002406_Selmo1 NNED--SW-------SPEHLYACDEFRMFEFKVRRCMRGRSHDWTECPFAHPGEKARRRD
                *: *  *:       ** . *:**.***::****** ***********:***********

AT4G29190.1     PRKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFA
Sm002406_Selmo1 PRRFHYSGTSCPDFRKGCCKNGDSCDLAHGVFECWLHPARYRTQPCKDGRNCKRKVCFFA
                **::*****:******* **:****::********************** ** **:****

AT4G29190.1     HSPDQLRFLHTRSPDRVDSF-DVSSPIRARAFQLSISPVSGSPPMSPRADSESS-PMTQS
Sm002406_Selmo1 HTPEQLRLPSPTSSSSASSISSASSP--------PLSPVDNSPPLSPCGTPRGTPPRDAA
                *:*:***:  . *.. ..*: ..***        .:***..***:** . ...: *   :

AT4G29190.1     LSRSLG-SCSIND---------VVPSF---------------------------------
Sm002406_Selmo1 LLKSIAHAAAVADAHALLAAAAAVPQRHVAAALERMKSMPHVTAAAAAAAAVEADRRSRL
                * :*:. :.:: *         .**.                                  

AT4G29190.1     --RNLQFNS--------VKSFPR----NNPLFGFGSPRGSILGPGFQSLPTTPTRPGNLD
Sm002406_Selmo1 LGQSLSFNSRTSNAASLVAALHRQMELNEPGVGYSVPPG-----GYSSPPVSPS------
                  :.*.***        * :: *    *:* .*:. * *     *:.* *.:*:      

AT4G29190.1     IWEYGLEEEPVMERVVESGRELREKM---------REKLHKENCMDRVAQDPDQNLGE--
Sm002406_Selmo1 --PYG--RSPLF-RSNDCARSLSPSLGMGSPSIWSRTAIDDEYYAQRF--DQSKNLAECG
                   **  ..*:: *  :..*.*  .:         *  :..*   :*.  * .:**.*  

AT4G29190.1     ---APDVGWVSDLLM--
Sm002406_Selmo1 GENCPDLGWVNELVAIN
                   .**:***.:*:
BoxShade v3.31 C (beta, 970507) Output
AT4G29190.1     - - - - - - M M I G E T R R T Y P T V E I P P W P V L E E L T T S E F F S P V M N S P D C S M L E A L A G L Q R Y L P S
Sm002406_Selmo1    M D L H V G M G G G S G G N A F G S V S - - - - - - - - - - - - - - - - - - - A D S G S C D S P T S M G A L H K F L P S
 
AT4G29190.1     N E P D P E S Y P D L L G P D S P I D A Y S C D H F R M Y D F K V R R C A R G R S H D W T E C P Y A H P G E K A R R R D
Sm002406_Selmo1    N N E D - - S W - - - - - - - S P E H L Y A C D E F R M F E F K V R R C M R G R S H D W T E C P F A H P G E K A R R R D
 
AT4G29190.1     P R K Y H Y S G T A C P D F R K G G C K K G D S C E F A H G V F E C W L H P A R Y R T Q P C K D G G N C L R K I C F F A
Sm002406_Selmo1    P R R F H Y S G T S C P D F R K G C C K N G D S C D L A H G V F E C W L H P A R Y R T Q P C K D G R N C K R K V C F F A
 
AT4G29190.1     H S P D Q L R F L H T R S P D R V D S F - D V S S P I R A R A F Q L S I S P V S G S P P M S P R A D S E S S - P M T Q S
Sm002406_Selmo1    H T P E Q L R L P S P T S S S S A S S I S S A S S P - - - - - - - - P L S P V D N S P P L S P C G T P R G T P P R D A A
 
AT4G29190.1     L S R S L G - S C S I N D - - - - - - - - - V V P S F - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Sm002406_Selmo1    L L K S I A H A A A V A D A H A L L A A A A A V P Q R H V A A A L E R M K S M P H V T A A A A A A A A V E A D R R S R L
 
AT4G29190.1     - - R N L Q F N S - - - - - - - - V K S F P R - - - - N N P L F G F G S P R G S I L G P G F Q S L P T T P T R P G N L D
Sm002406_Selmo1    L G Q S L S F N S R T S N A A S L V A A L H R Q M E L N E P G V G Y S V P P G - - - - - G Y S S P P V S P S - - - - - -
 
AT4G29190.1     I W E Y G L E E E P V M E R V V E S G R E L R E K M - - - - - - - - - R E K L H K E N C M D R V A Q D P D Q N L G E - -
Sm002406_Selmo1    - - P Y G - - R S P L F - R S N D C A R S L S P S L G M G S P S I W S R T A I D D E Y Y A Q R F - - D Q S K N L A E C G
 
AT4G29190.1     - - - A P D V G W V S D L L M - -
Sm002406_Selmo1    G E N C P D L G W V N E L V A I N
 
0