fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G35280.1 MISGALDLNVPPTIQDL at 256/284 in AT4G35280.1
DTSGCCLDLRLGL at 276/284 in AT4G35280.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt021511 AKEGCGLDLNLPAPME in 268/297 AT4G35280.1 1st_1st 0.476277372 Ia
SSYSSGLTLDLRLCL in 288/297
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G35280.1     MNNNHSYDDRSFHIPLHPSNTSNPNPNLQFALSSSYDH-SPKKKRTKTVASSSSSSPKSA
pt021511_POPTR_ MTSHNTDPDPDFCL---PSSSSIP---------TTYHHQNPRKKRTRLIKIEPSLLPSST
                *..:::  * .* :   **.:* *         ::*.* .*:****: :  ..*  *.*:

AT4G35280.1     -SKPKYTKKPDPNAPKITRPCTECGRKFWSWKALFGHMRCHPERQWRGINPPPNYRVPTA
pt021511_POPTR_ ISRPKYYNKPDPSAPKITRPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNYRRPVS
                 *:*** :****.********:***:****************************** *.:

AT4G35280.1     ASSKQLNQILP-NWVSFMSEEDHEVASCLLMLSNGTPSSSSIE----RFECGGCKKVFGS
pt021511_POPTR_ PIDQPVSIANPTNWEDMMTAEDHEVASCLLMLAD-SDGAAMLEVNCTRFECSSCRKVFGS
                . .: :.   * ** .:*: ************:: : .:: :*    ****..*:*****

AT4G35280.1     HQALGGHRASHKNVKGCFAITNVTDDPMTVSTSSG--------HDHQGKILTFSGHHKCN
pt021511_POPTR_ HQALGGHRASHKNVKGCFALTR-SDGCEVVEDHGGSGDVKENVEDNSKALLVLG--HKCS
                *******************:*. :*.  .*.  .*        .*:.  :*.:.  ***.

AT4G35280.1     ICFRVFSSGQALGGHMRCHWEKEEE---PMISG----------ALDLNVPPTIQDLSTSD
pt021511_POPTR_ ICLRMFPSGQALGGHMRCHWEKGEENSSSMNQGLHFLTAKEGCGLDLNLPAPMEDESSSS
                **:*:*.*************** **   .* .*          .****:*..::* *:*.

AT4G35280.1     -TSGCCLDLRLGL
pt021511_POPTR_ YSSGLTLDLRLCL
                 :**  ***** *
BoxShade v3.31 C (beta, 970507) Output
AT4G35280.1     M N N N H S Y D D R S F H I P L H P S N T S N P N P N L Q F A L S S S Y D H - S P K K K R T K T V A S S S S S S P K S A
pt021511_POPTR_    M T S H N T D P D P D F C L - - - P S S S S I P - - - - - - - - - T T Y H H Q N P R K K R T R L I K I E P S L L P S S T
 
AT4G35280.1     - S K P K Y T K K P D P N A P K I T R P C T E C G R K F W S W K A L F G H M R C H P E R Q W R G I N P P P N Y R V P T A
pt021511_POPTR_    I S R P K Y Y N K P D P S A P K I T R P C S E C G K K F W S W K A L F G H M R C H P E R Q W R G I N P P P N Y R R P V S
 
AT4G35280.1     A S S K Q L N Q I L P - N W V S F M S E E D H E V A S C L L M L S N G T P S S S S I E - - - - R F E C G G C K K V F G S
pt021511_POPTR_    P I D Q P V S I A N P T N W E D M M T A E D H E V A S C L L M L A D - S D G A A M L E V N C T R F E C S S C R K V F G S
 
AT4G35280.1     H Q A L G G H R A S H K N V K G C F A I T N V T D D P M T V S T S S G - - - - - - - - H D H Q G K I L T F S G H H K C N
pt021511_POPTR_    H Q A L G G H R A S H K N V K G C F A L T R - S D G C E V V E D H G G S G D V K E N V E D N S K A L L V L G - - H K C S
 
AT4G35280.1     I C F R V F S S G Q A L G G H M R C H W E K E E E - - - P M I S G - - - - - - - - - - A L D L N V P P T I Q D L S T S D
pt021511_POPTR_    I C L R M F P S G Q A L G G H M R C H W E K G E E N S S S M N Q G L H F L T A K E G C G L D L N L P A P M E D E S S S S
 
AT4G35280.1     - T S G C C L D L R L G L
pt021511_POPTR_    Y S S G L T L D L R L C L
 
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