fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G35280.1 MISGALDLNVPPTIQDL at 256/284 in AT4G35280.1
DTSGCCLDLRLGL at 276/284 in AT4G35280.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt021511 AKEGCGLDLNLPAPME in 268/297 AT4G35280.1 1st_1st 0.476277372 Ia
SSYSSGLTLDLRLCL in 288/297
Pt019083 KEGSVLDLNLPAPVEDES in 290/318 AT4G35280.1 not_1st 0.443430656 II
SFYSSGLTLDLRLGL in 309/318
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G35280.1     MNNNHSYDDRSFHIPLHPSNTSNPNPNLQFALSSSYDHSPKKKRTKTVASSSSSSPKSA-
pt019083_POPTR_ MTNHNTDPDPDFGL---PSSSSIP--------TTYYHQNPRKKRTKLIKIEPSLLPSSTI
pt021511_POPTR_ MTSHNTDPDPDFCL---PSSSSIP--------TTYHHQNPRKKRTRLIKIEPSLLPSSTI
                *..:::  * .* :   **.:* *        :: :.:.*:****: :  ..*  *.*: 

AT4G35280.1     SKPKYTKKPDPNAPKITRPCTECGRKFWSWKALFGHMRCHPERQWRGINPPPNYRVPTAA
pt019083_POPTR_ SKPKYYKKPDPSAPKITRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNYRRPVSP
pt021511_POPTR_ SRPKYYNKPDPSAPKITRPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNYRRPVSP
                *:*** :****.********:***:****************************** *.:.

AT4G35280.1     SSKQLNQILP-NWVSFMSEEDHEVASCLLMLSNGTPSSSSIE------------------
pt019083_POPTR_ I-QLLSIVSSTNWEDMLTAEDHEVASCLLMLAN-SDGAIMLERNEFGGGVVAGSSHQARD
pt021511_POPTR_ IDQPVSIANPTNWEDMMTAEDHEVASCLLMLAD-SDGAAMLE------------------
                  : :.   . ** .::: ************:: : .:  :*                  

AT4G35280.1     -------RFECGGCKKVFGSHQALGGHRASHKNVKGCFAITNVTDDPMTVSTSSGH----
pt019083_POPTR_ HDQVNCTRVECSSCEKVFGSHLALGGRSASHKNVKGCFAIKR-NDGCEVVEDHSGSGDVK
pt021511_POPTR_ ---VNCTRFECSSCRKVFGSHQALGGHRASHKNVKGCFALTR-SDGCEVVEDHGGSGDVK
                       *.**..*.****** ****: ***********:.. .*.  .*.  .*     

AT4G35280.1     ---DHQGKILTFSGHHKCNICFRVFSSGQALGGHMRCHWEKEEEPMIS----G-------
pt019083_POPTR_ ENVEDNSKALMVLG-HRCSICSRVFPSGQALGGHKRCHWEKGEEISSSINQGGLHVLTEK
pt021511_POPTR_ ENVEDNSKALLVLG-HKCSICLRMFPSGQALGGHMRCHWEKGEENSSSMNQ-GLHFLTAK
                   :.:.* * . * *:*.** *:*.******** ****** **   *    *       

AT4G35280.1     ---ALDLNVPPTIQDLSTSD-TSGCCLDLRLGL
pt019083_POPTR_ EGSVLDLNLPAPVEDESSSFYSSGLTLDLRLGL
pt021511_POPTR_ EGCGLDLNLPAPMEDESSSSYSSGLTLDLRLCL
                    ****:*..::* *:*  :**  ***** *
BoxShade v3.31 C (beta, 970507) Output
AT4G35280.1     M N N N H S Y D D R S F H I P L H P S N T S N P N P N L Q F A L S S S Y D H S P K K K R T K T V A S S S S S S P K S A -
pt019083_POPTR_    M T N H N T D P D P D F G L - - - P S S S S I P - - - - - - - - T T Y Y H Q N P R K K R T K L I K I E P S L L P S S T I
pt021511_POPTR_    M T S H N T D P D P D F C L - - - P S S S S I P - - - - - - - - T T Y H H Q N P R K K R T R L I K I E P S L L P S S T I
 
AT4G35280.1     S K P K Y T K K P D P N A P K I T R P C T E C G R K F W S W K A L F G H M R C H P E R Q W R G I N P P P N Y R V P T A A
pt019083_POPTR_    S K P K Y Y K K P D P S A P K I T R P C T E C G K K F W S W K A L F G H M R C H P E R Q W R G I N P P P N Y R R P V S P
pt021511_POPTR_    S R P K Y Y N K P D P S A P K I T R P C S E C G K K F W S W K A L F G H M R C H P E R Q W R G I N P P P N Y R R P V S P
 
AT4G35280.1     S S K Q L N Q I L P - N W V S F M S E E D H E V A S C L L M L S N G T P S S S S I E - - - - - - - - - - - - - - - - - -
pt019083_POPTR_    I - Q L L S I V S S T N W E D M L T A E D H E V A S C L L M L A N - S D G A I M L E R N E F G G G V V A G S S H Q A R D
pt021511_POPTR_    I D Q P V S I A N P T N W E D M M T A E D H E V A S C L L M L A D - S D G A A M L E - - - - - - - - - - - - - - - - - -
 
AT4G35280.1     - - - - - - - R F E C G G C K K V F G S H Q A L G G H R A S H K N V K G C F A I T N V T D D P M T V S T S S G H - - - -
pt019083_POPTR_    H D Q V N C T R V E C S S C E K V F G S H L A L G G R S A S H K N V K G C F A I K R - N D G C E V V E D H S G S G D V K
pt021511_POPTR_    - - - V N C T R F E C S S C R K V F G S H Q A L G G H R A S H K N V K G C F A L T R - S D G C E V V E D H G G S G D V K
 
AT4G35280.1     - - - D H Q G K I L T F S G H H K C N I C F R V F S S G Q A L G G H M R C H W E K E E E P M I S - - - - G - - - - - - -
pt019083_POPTR_    E N V E D N S K A L M V L G - H R C S I C S R V F P S G Q A L G G H K R C H W E K G E E I S S S I N Q G G L H V L T E K
pt021511_POPTR_    E N V E D N S K A L L V L G - H K C S I C L R M F P S G Q A L G G H M R C H W E K G E E N S S S M N Q - G L H F L T A K
 
AT4G35280.1     - - - A L D L N V P P T I Q D L S T S D - T S G C C L D L R L G L
pt019083_POPTR_    E G S V L D L N L P A P V E D E S S S F Y S S G L T L D L R L G L
pt021511_POPTR_    E G C G L D L N L P A P M E D E S S S S Y S S G L T L D L R L C L
 
0