fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G35280.1 MISGALDLNVPPTIQDL at 256/284 in AT4G35280.1
DTSGCCLDLRLGL at 276/284 in AT4G35280.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os007482 RHDDTTLTLSLAPPAA in 35/263 AT4G35280.1 1st_1st 0.197080291 Ib
ATAATALDLNLNLPPP in 230/263
GGSNETLDLNLGLHR in 254/263
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G35280.1     MNNNHSYDDRSFHIPLHPSNTSNPNPNLQFALSSSYDHSPKKKRTKTVASSSSSSPKSAS
Os007482_Os02t0 MAQQHS--------PPPPPAPPSPPPAL------PCDPMPPPPRHDDTTLTLSLAPPAAA
                * ::**        *  *. ...* * *      . *  *   * . .: : * :* :*:

AT4G35280.1     KP-------KYTKKPDPNAPKITRPCTECGRKFWSWKALFGHMRCHPERQWRGINPPPNY
Os007482_Os02t0 RPLQAMVARAKCSSPTGDAP----PCTECGRQFLSWKALFGHMRCHPERHWRGITPPGGG
                :*          ..*  :**    *******:* ***************:****.** . 

AT4G35280.1     RVPTAASSKQLNQILPNWVSFMSEEDHEVASCLLMLSNGTPSSSSIERFECGGCKKVFGS
Os007482_Os02t0 GAGAASSTA---------ASQFTLREREVAASLLMLSGAHPARSGAGKGK--GKKRLLAP
                 . :*:*:          .* :: .::***:.*****.. *: *.  : :  * *:::..

AT4G35280.1     HQALGGHRASHKNVKGCFAITNVTDDPMTVSTSSGHDHQGKILTFSGHHKCNICFRVFSS
Os007482_Os02t0 AAAAAPHHS-----------------PATCAD----------------HKCAVCHRGFAT
                  * . *::                 * * :                 *** :*.* *::

AT4G35280.1     GQALGGHMRCHWEKEE----------------------------EPMISGA---LDLNVP
Os007482_Os02t0 GQALGGHKRCHWPDRSCADQAISMLAVSTAGSSSTTTTSASPPPAPATAATALDLNLNLP
                ******* **** ...                             *  :.:   *:**:*

AT4G35280.1     P-----TIQDLSTSDTSGCCLDLRLGL--
Os007482_Os02t0 PPLARKNLQDGGSNET----LDLNLGLHR
                *     .:** .:.:*    ***.***
BoxShade v3.31 C (beta, 970507) Output
AT4G35280.1     M N N N H S Y D D R S F H I P L H P S N T S N P N P N L Q F A L S S S Y D H S P K K K R T K T V A S S S S S S P K S A S
Os007482_Os02t0    M A Q Q H S - - - - - - - - P P P P P A P P S P P P A L - - - - - - P C D P M P P P P R H D D T T L T L S L A P P A A A
 
AT4G35280.1     K P - - - - - - - K Y T K K P D P N A P K I T R P C T E C G R K F W S W K A L F G H M R C H P E R Q W R G I N P P P N Y
Os007482_Os02t0    R P L Q A M V A R A K C S S P T G D A P - - - - P C T E C G R Q F L S W K A L F G H M R C H P E R H W R G I T P P G G G
 
AT4G35280.1     R V P T A A S S K Q L N Q I L P N W V S F M S E E D H E V A S C L L M L S N G T P S S S S I E R F E C G G C K K V F G S
Os007482_Os02t0    G A G A A S S T A - - - - - - - - - A S Q F T L R E R E V A A S L L M L S G A H P A R S G A G K G K - - G K K R L L A P
 
AT4G35280.1     H Q A L G G H R A S H K N V K G C F A I T N V T D D P M T V S T S S G H D H Q G K I L T F S G H H K C N I C F R V F S S
Os007482_Os02t0    A A A A A P H H S - - - - - - - - - - - - - - - - - P A T C A D - - - - - - - - - - - - - - - - H K C A V C H R G F A T
 
AT4G35280.1     G Q A L G G H M R C H W E K E E - - - - - - - - - - - - - - - - - - - - - - - - - - - - E P M I S G A - - - L D L N V P
Os007482_Os02t0    G Q A L G G H K R C H W P D R S C A D Q A I S M L A V S T A G S S S T T T T S A S P P P A P A T A A T A L D L N L N L P
 
AT4G35280.1     P - - - - - T I Q D L S T S D T S G C C L D L R L G L - -
Os007482_Os02t0    P P L A R K N L Q D G G S N E T - - - - L D L N L G L H R
 
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