fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G35280.1 MISGALDLNVPPTIQDL at 256/284 in AT4G35280.1
DTSGCCLDLRLGL at 276/284 in AT4G35280.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb016353 PHHDTTLTLSLALPPP in 28/268 AT4G35280.1 1st_1st 0.222627737 Ib
AAPATTLDLNLPPPGM in 233/268
GSLDATLDLKLGF in 261/268
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G35280.1     MNNNHSYDDRSFHI------PLHPSNTSNPNPNLQFALSSSYDHSPKKKRTKTVASSSSS
Sb016353_Sorbi1 ---------MATPIRLAGAPPARPPQPLSPPPHHDTTLTLSLALPPP-------PFVCAI
                          :  *      * :*.:. .* *: : :*: *   .*        .  .: 

AT4G35280.1     SPKSASKPKYTKKPDPNAPKITR-------------PCTECGRKFWSWKALFGHMRCHPE
Sb016353_Sorbi1 SPRPAPRP-------PDGVVVARVRSSSLTEDTPPSPCSECGKQFPSWKALFGHMRCHPE
                **:.*.:*       *:.  ::*             **:***::* **************

AT4G35280.1     RQWRGINPPPNYR---VPTAASSKQLNQILPNWVSFMSEEDHEVASCLLMLSNGTPSSSS
Sb016353_Sorbi1 RQWRGIKKPPHFRHQAVVAAAADLHF-----------TEQERETATSLLMLRQGEPAGK-
                ******: **::*   * :**:. ::           :*:::*.*:.**** :* *:.. 

AT4G35280.1     IERFECGGCKKVFGSHQALGGHRASHKNVKGCFAITNVTDDPMTVSTSSGHDHQGKILTF
Sb016353_Sorbi1 -------------GKKSVLGASPPSAKAI--CGASTSASLPPPSARCDD-----------
                             *.:..**.  .* * :  * * *..:  * :.  ..           

AT4G35280.1     SGHHKCNICFRVFSSGQALGGHMRCHWEK-------------EEEPMISG------ALDL
Sb016353_Sorbi1 ---HKCSVCARGFATGQALGGHKRCHWEKTACVEGTIAVATSSASPTSSSQAAPATTLDL
                   ***.:* * *::******* ******             . .*  *.      :***

AT4G35280.1     NVP----PTIQDLSTSDTSG---CCLDLRLGL
Sb016353_Sorbi1 NLPPPGMPPLPKKWKRDQGGSLDATLDLKLGF
                *:*    *.: .  . * .*   . ***:**:
BoxShade v3.31 C (beta, 970507) Output
AT4G35280.1     M N N N H S Y D D R S F H I - - - - - - P L H P S N T S N P N P N L Q F A L S S S Y D H S P K K K R T K T V A S S S S S
Sb016353_Sorbi1    - - - - - - - - - M A T P I R L A G A P P A R P P Q P L S P P P H H D T T L T L S L A L P P P - - - - - - - P F V C A I
 
AT4G35280.1     S P K S A S K P K Y T K K P D P N A P K I T R - - - - - - - - - - - - - P C T E C G R K F W S W K A L F G H M R C H P E
Sb016353_Sorbi1    S P R P A P R P - - - - - - - P D G V V V A R V R S S S L T E D T P P S P C S E C G K Q F P S W K A L F G H M R C H P E
 
AT4G35280.1     R Q W R G I N P P P N Y R - - - V P T A A S S K Q L N Q I L P N W V S F M S E E D H E V A S C L L M L S N G T P S S S S
Sb016353_Sorbi1    R Q W R G I K K P P H F R H Q A V V A A A A D L H F - - - - - - - - - - - T E Q E R E T A T S L L M L R Q G E P A G K -
 
AT4G35280.1     I E R F E C G G C K K V F G S H Q A L G G H R A S H K N V K G C F A I T N V T D D P M T V S T S S G H D H Q G K I L T F
Sb016353_Sorbi1    - - - - - - - - - - - - - G K K S V L G A S P P S A K A I - - C G A S T S A S L P P P S A R C D D - - - - - - - - - - -
 
AT4G35280.1     S G H H K C N I C F R V F S S G Q A L G G H M R C H W E K - - - - - - - - - - - - - E E E P M I S G - - - - - - A L D L
Sb016353_Sorbi1    - - - H K C S V C A R G F A T G Q A L G G H K R C H W E K T A C V E G T I A V A T S S A S P T S S S Q A A P A T T L D L
 
AT4G35280.1     N V P - - - - P T I Q D L S T S D T S G - - - C C L D L R L G L
Sb016353_Sorbi1    N L P P P G M P P L P K K W K R D Q G G S L D A T L D L K L G F
 
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