fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G36570.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt000491 not found in 85aa AT4G39250.1 1st_not 0.819047619 II
Pt018851 not found in 99aa AT4G39250.1 not_not 0.809523809 III
Pt037449 not found in 78aa AT4G39250.1 not_not 0.8 III
Pt021017 not found in 87aa AT2G21650.1 not_not 0.780952380 III
Pt038744 not found in 99aa AT1G75250.2 not_not 0.771428571 III
Pt000040 not found in 84aa AT1G75250.1 not_not 0.761904761 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G36570.1     ------------------------------------------------------------
pt000491_POPTR_ MASNSLNSSRNCSSSWTPKQNKLFEKALALYDKDTPDRWHNVAKAVGGKSAEEVERHYEI
pt021017_POPTR_ MASSSM-SSRG-SGSWTVQQNKAFERALAVYDRDTPDRWYNVARAVGGKTAEEVKRHYEL
pt000040_POPTR_ MAYFT--SSHGSSSSWTPKQNKLFEKALAVYDKDTPDRWQNVAKAVGGKSAEEVKMHYDR
pt037449_POPTR_ MSSNSL-------TSWTPKQNKLFEKALALHDKDTPDRWHNVAKAVGGKSAEEVKRHYEI
pt038744_POPTR_ MSYFT--SSNGSGSSWTAKQNKLFEKALAVYDKDTPDRWQNVAKAVGGKSPEEVKRHYDR
pt018851_POPTR_ MASSSV-SSRG-SGSWTAQQNKAFERALAVYDRDTPDRWHNVARAVGGKTAEEVKRHYEI
                                                                            

AT4G36570.1     -----------------------------------------
pt000491_POPTR_ LIKDVREIESGRVPFPNYRSSG-NSN---------------
pt021017_POPTR_ LVEDVKHIESGHVPFPNYRTTGANGHARG------------
pt000040_POPTR_ LVEDLTYIESGQAPLPNYKPSGSNST---------------
pt037449_POPTR_ LIKDVREIESGRVPFPNYRSSG-NGN---------------
pt038744_POPTR_ LVEDLVYIESGQAPLPNYKPSGSNGRGLVEEQRLTRNLKLQ
pt018851_POPTR_ LVEDVKHIESGRVPFPNYRTTGANGHSKTGEEKMMKNMKLQ
BoxShade v3.31 C (beta, 970507) Output
AT4G36570.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt000491_POPTR_    M A S N S L N S S R N C S S S W T P K Q N K L F E K A L A L Y D K D T P D R W H N V A K A V G G K S A E E V E R H Y E I
pt021017_POPTR_    M A S S S M - S S R G - S G S W T V Q Q N K A F E R A L A V Y D R D T P D R W Y N V A R A V G G K T A E E V K R H Y E L
pt000040_POPTR_    M A Y F T - - S S H G S S S S W T P K Q N K L F E K A L A V Y D K D T P D R W Q N V A K A V G G K S A E E V K M H Y D R
pt037449_POPTR_    M S S N S L - - - - - - - T S W T P K Q N K L F E K A L A L H D K D T P D R W H N V A K A V G G K S A E E V K R H Y E I
pt038744_POPTR_    M S Y F T - - S S N G S G S S W T A K Q N K L F E K A L A V Y D K D T P D R W Q N V A K A V G G K S P E E V K R H Y D R
pt018851_POPTR_    M A S S S V - S S R G - S G S W T A Q Q N K A F E R A L A V Y D R D T P D R W H N V A R A V G G K T A E E V K R H Y E I
 
AT4G36570.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt000491_POPTR_    L I K D V R E I E S G R V P F P N Y R S S G - N S N - - - - - - - - - - - - - - -
pt021017_POPTR_    L V E D V K H I E S G H V P F P N Y R T T G A N G H A R G - - - - - - - - - - - -
pt000040_POPTR_    L V E D L T Y I E S G Q A P L P N Y K P S G S N S T - - - - - - - - - - - - - - -
pt037449_POPTR_    L I K D V R E I E S G R V P F P N Y R S S G - N G N - - - - - - - - - - - - - - -
pt038744_POPTR_    L V E D L V Y I E S G Q A P L P N Y K P S G S N G R G L V E E Q R L T R N L K L Q
pt018851_POPTR_    L V E D V K H I E S G R V P F P N Y R T T G A N G H S K T G E E K M M K N M K L Q
 
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