fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G36990.1 VGEGLKLFGVWLKGE at 236/284 in AT4G36990.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt036855 EGGGLKLFGVLLKRI in 174/275 AT4G36990.1 1st_1st 0.450495049 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G36990.1     MTAVTAAQRSVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKH
pt036855_POPTR_ -----MAQRSAPAPFLTKTYQLVDDPSTDDVISWNETGTTFVVWKTADFAKDLLPNYFKH
                      ****.*****:******** *****:**** **:*******:*******:****

AT4G36990.1     NNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRKSVIA------STAGK
pt036855_POPTR_ NNFSSFVRQLNTYGFRKIVPDKWEFANENFRRGQKELLAEIRRRKTAAASPTTQTSPAGK
                ******:********** *********: **** ::**::*****:. *      *.***

AT4G36990.1     CVVVGSPSESNSGGGDDHGSSSTSSPGSSKNPGSVENMVADLSGENEKLKRENNNLSSEL
pt036855_POPTR_ S--GGASSSSNS--GEDLGSTSTSSP-DSKNPGEDDD--------------DDENTSDD-
                .   *:.*.***  *:* **:***** .*****. ::              :::* *.: 

AT4G36990.1     AAAKKQRDELVTFLTGHLKVRPEQIDKMIKGGKFKPVESDEESECEGCDGGGGAEEGVGE
pt036855_POPTR_ --------------TDH---------------------DDTDHDGDGGEGG---------
                              *.*                     .* : : :* :**         

AT4G36990.1     GLKLFGVWLKGERKKRD-----RD--------------------------------EKNY
pt036855_POPTR_ GLKLFGVLLKRIRRRRSNYDDVRDLGRRWQNEDGVKEMTRFLWKRRRNVQQGGLTENKNE
                ******* **  *::*.     **                                :** 

AT4G36990.1     VVSG-----------SRMTEIKN-----------VDFHAPLWKSSKVCN---
pt036855_POPTR_ LVSGDAAFCNVDEARTRLTAHQGHGSVSVGRKSLVYF--------KVINFIL
                :***           :*:*  :.           * *        ** *
BoxShade v3.31 C (beta, 970507) Output
AT4G36990.1     M T A V T A A Q R S V P A P F L S K T Y Q L V D D H S T D D V V S W N E E G T A F V V W K T A E F A K D L L P Q Y F K H
pt036855_POPTR_    - - - - - M A Q R S A P A P F L T K T Y Q L V D D P S T D D V I S W N E T G T T F V V W K T A D F A K D L L P N Y F K H
 
AT4G36990.1     N N F S S F I R Q L N T Y G F R K T V P D K W E F A N D Y F R R G G E D L L T D I R R R K S V I A - - - - - - S T A G K
pt036855_POPTR_    N N F S S F V R Q L N T Y G F R K I V P D K W E F A N E N F R R G Q K E L L A E I R R R K T A A A S P T T Q T S P A G K
 
AT4G36990.1     C V V V G S P S E S N S G G G D D H G S S S T S S P G S S K N P G S V E N M V A D L S G E N E K L K R E N N N L S S E L
pt036855_POPTR_    S - - G G A S S S S N S - - G E D L G S T S T S S P - D S K N P G E D D D - - - - - - - - - - - - - - D D E N T S D D -
 
AT4G36990.1     A A A K K Q R D E L V T F L T G H L K V R P E Q I D K M I K G G K F K P V E S D E E S E C E G C D G G G G A E E G V G E
pt036855_POPTR_    - - - - - - - - - - - - - - T D H - - - - - - - - - - - - - - - - - - - - - D D T D H D G D G G E G G - - - - - - - - -
 
AT4G36990.1     G L K L F G V W L K G E R K K R D - - - - - R D - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - E K N Y
pt036855_POPTR_    G L K L F G V L L K R I R R R R S N Y D D V R D L G R R W Q N E D G V K E M T R F L W K R R R N V Q Q G G L T E N K N E
 
AT4G36990.1     V V S G - - - - - - - - - - - S R M T E I K N - - - - - - - - - - - V D F H A P L W K S S K V C N - - -
pt036855_POPTR_    L V S G D A A F C N V D E A R T R L T A H Q G H G S V S V G R K S L V Y F - - - - - - - - K V I N F I L
 
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