fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G36990.1 VGEGLKLFGVWLKGE at 236/284 in AT4G36990.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm029942 GGHCLKLFGVWLKGD in 229/285 AT4G36990.1 not_1st 0.497524752 II
Gm047388 NGESLKLFGVWLKGQ in 242/282 AT4G36990.1 not_1st 0.495049504 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G36990.1     MTAVTAAQRSVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKH
gm047388_Glyma1 ---MSQQQRSTPAPFLTKTYLLVDDPATDDVVSWSEGGNTFVVWKHADFAKDLLPKYFKH
gm029942_Glyma1 ----MLQQRSVPAPFLTKTYQLVEDPGTDEVISWGESGNTFVVWKHADFAKDLLPKYFKH
                       ***.*****:*** **:* .**:*:**.* *.:***** *:*******:****

AT4G36990.1     NNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRKSVIASTAGKCVVVGS
gm047388_Glyma1 NNFSSFVRQLNTYGFRKTVPDKWEFANEYFKRGQTDLLAEIRRRKVV-------SPVTGK
gm029942_Glyma1 NNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGQKELLSEIKRRKTVPQSST-HSPDAGK
                ******:********** *********::*:**  :**::*:*** *       .  .*.

AT4G36990.1     P-------SESNSGGGDDHGSSSTSSPGS-SKNPGSVENMVA---DLSGENEKLKRENNN
gm047388_Glyma1 STGGGVNISASHSGG-DDMGSTST----------GSMEAATAAGADISGENEKLKKDNEK
gm029942_Glyma1 P--GAEGNSPSNPGGCDDAGSTSTSSSSSGSKNQGSVETNTTPSHQLSSENEKLKKDNET
                .       * *:.** ** **:**          **:*  .:   ::*.******::*:.

AT4G36990.1     LSSELAAAKKQRDELVTFLTGHLKVRPEQIDKMIKGGKFKP---------------VESD
gm047388_Glyma1 LSGELALAKKQCEELVAFLRDSLNVSPDVIERIIRQGTCVSSNNDAVRFDAIINNDLDDD
gm029942_Glyma1 LSCELARARKQCDELVAFLRDRLMVGPDQIDRIMRQGSCGS-------------------
                ** *** *:** :***:** . * * *: *::::: *.  .                   

AT4G36990.1     EES--ECEGCD---GGGGAEEGVGEGLKLFGVWLKG-----ERKKRDRDEKNYV-VSGSR
gm047388_Glyma1 ENAVGECEPQQPPPKGDN-----GESLKLFGVWLKG----------QNGKENSIGKCRKR
gm029942_Glyma1 ENAVGE--------GGGG-----GHCLKLFGVWLKGDTLTDKRNNHKRGREDQMGFGGPR
                *::  *         *..     *. **********          ....:: :     *

AT4G36990.1     MTEIKNVDFHAPLWKSSKVCN---------
gm047388_Glyma1 GRQDY------PIAATAKELKTLV------
gm029942_Glyma1 LKESK------PVVDFSRNRMMMINEKGKG
                  :        *:   ::
BoxShade v3.31 C (beta, 970507) Output
AT4G36990.1     M T A V T A A Q R S V P A P F L S K T Y Q L V D D H S T D D V V S W N E E G T A F V V W K T A E F A K D L L P Q Y F K H
gm047388_Glyma1    - - - M S Q Q Q R S T P A P F L T K T Y L L V D D P A T D D V V S W S E G G N T F V V W K H A D F A K D L L P K Y F K H
gm029942_Glyma1    - - - - M L Q Q R S V P A P F L T K T Y Q L V E D P G T D E V I S W G E S G N T F V V W K H A D F A K D L L P K Y F K H
 
AT4G36990.1     N N F S S F I R Q L N T Y G F R K T V P D K W E F A N D Y F R R G G E D L L T D I R R R K S V I A S T A G K C V V V G S
gm047388_Glyma1    N N F S S F V R Q L N T Y G F R K T V P D K W E F A N E Y F K R G Q T D L L A E I R R R K V V - - - - - - - S P V T G K
gm029942_Glyma1    N N F S S F V R Q L N T Y G F R K I V P D K W E F A N E H F K R G Q K E L L S E I K R R K T V P Q S S T - H S P D A G K
 
AT4G36990.1     P - - - - - - - S E S N S G G G D D H G S S S T S S P G S - S K N P G S V E N M V A - - - D L S G E N E K L K R E N N N
gm047388_Glyma1    S T G G G V N I S A S H S G G - D D M G S T S T - - - - - - - - - - G S M E A A T A A G A D I S G E N E K L K K D N E K
gm029942_Glyma1    P - - G A E G N S P S N P G G C D D A G S T S T S S S S S G S K N Q G S V E T N T T P S H Q L S S E N E K L K K D N E T
 
AT4G36990.1     L S S E L A A A K K Q R D E L V T F L T G H L K V R P E Q I D K M I K G G K F K P - - - - - - - - - - - - - - - V E S D
gm047388_Glyma1    L S G E L A L A K K Q C E E L V A F L R D S L N V S P D V I E R I I R Q G T C V S S N N D A V R F D A I I N N D L D D D
gm029942_Glyma1    L S C E L A R A R K Q C D E L V A F L R D R L M V G P D Q I D R I M R Q G S C G S - - - - - - - - - - - - - - - - - - -
 
AT4G36990.1     E E S - - E C E G C D - - - G G G G A E E G V G E G L K L F G V W L K G - - - - - E R K K R D R D E K N Y V - V S G S R
gm047388_Glyma1    E N A V G E C E P Q Q P P P K G D N - - - - - G E S L K L F G V W L K G - - - - - - - - - - Q N G K E N S I G K C R K R
gm029942_Glyma1    E N A V G E - - - - - - - - G G G G - - - - - G H C L K L F G V W L K G D T L T D K R N N H K R G R E D Q M G F G G P R
 
AT4G36990.1     M T E I K N V D F H A P L W K S S K V C N - - - - - - - - -
gm047388_Glyma1    G R Q D Y - - - - - - P I A A T A K E L K T L V - - - - - -
gm029942_Glyma1    L K E S K - - - - - - P V V D F S R N R M M M I N E K G K G
 
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