fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G38960.1 IDDEMIDLNANPQRVHE at 138/183 in AT4G38960.1
IDDEMIDLNANPQRVHE at 105/150 in AT4G38960.2
IDDEMIDLNANPQRVHE at 181/226 in AT4G38960.3
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pp035016 NQSRMIDLNSRPKRLQN in 202/221 AT4G38960.1 not_1st 0.436137071 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G38960.1     MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICE
pp035016_Pp1s31 MRTLCDVCEAAPARLFCAADEAALCLKCDEKVHSCNKLAYRHVRLELAESRPVPRCDICE
                ** ***.** *.* :**********  ****** ***** ****: ***.  .* *****

AT4G38960.1     NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGRFLLLRQRIEFPGDK-------------
pp035016_Pp1s31 NAPAFFFCGVDGTSLCLQCDMDVHVGGKKAHERYLMMRQRVELPSRKLRFEDTVDTEKPT
                ******:* :**:******** ******::* *:*::***:*:*. *             

AT4G38960.1     ------PKENN-------------------------------------TRDNLQNQRVST
pp035016_Pp1s31 AEPNSVPADKNGTLLPDQHHHHHYHHHHHHHHHEDELRAGLPASKPSCDRDNSNAPAIAI
                      * ::*                                      *** :   :: 

AT4G38960.1     NGNGEANGKIDD-------EMIDLNANPQRVHEPSSNNNGIDVNNENNHEPAGLVPVGPF
pp035016_Pp1s31 AAGDEESLLLDDCLVQNQSRMIDLNSRPKRLQNQAS------------------VP----
                 ...* .  :**       .*****:.*:*::: :*                  **    

AT4G38960.1     KRESEK-
pp035016_Pp1s31 ----DKG
                    :*
BoxShade v3.31 C (beta, 970507) Output
AT4G38960.1     M R I L C D A C E N A A A I I F C A A D E A A L C R P C D E K V H M C N K L A S R H V R V G L A E P S N A P C C D I C E
pp035016_Pp1s31    M R T L C D V C E A A P A R L F C A A D E A A L C L K C D E K V H S C N K L A Y R H V R L E L A E S R P V P R C D I C E
 
AT4G38960.1     N A P A F F Y C E I D G S S L C L Q C D M V V H V G G K R T H G R F L L L R Q R I E F P G D K - - - - - - - - - - - - -
pp035016_Pp1s31    N A P A F F F C G V D G T S L C L Q C D M D V H V G G K K A H E R Y L M M R Q R V E L P S R K L R F E D T V D T E K P T
 
AT4G38960.1     - - - - - - P K E N N - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - T R D N L Q N Q R V S T
pp035016_Pp1s31    A E P N S V P A D K N G T L L P D Q H H H H H Y H H H H H H H H H E D E L R A G L P A S K P S C D R D N S N A P A I A I
 
AT4G38960.1     N G N G E A N G K I D D - - - - - - - E M I D L N A N P Q R V H E P S S N N N G I D V N N E N N H E P A G L V P V G P F
pp035016_Pp1s31    A A G D E E S L L L D D C L V Q N Q S R M I D L N S R P K R L Q N Q A S - - - - - - - - - - - - - - - - - - V P - - - -
 
AT4G38960.1     K R E S E K -
pp035016_Pp1s31    - - - - D K G
 
0