fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G38960.1 IDDEMIDLNANPQRVHE at 138/183 in AT4G38960.1
IDDEMIDLNANPQRVHE at 105/150 in AT4G38960.2
IDDEMIDLNANPQRVHE at 181/226 in AT4G38960.3
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pp004666 NQPRMIDLNSRPKRLQS in 201/220 AT4G38960.1 1st_1st 0.436137071 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G38960.1     MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICE
pp004666_Pp1s20 MRTLCDVCEAAPARLFCAADEAALCLKCDEKVHSCNKLANRHVRLELAESRAVPRCDICE
                ** ***.** *.* :**********  ****** *****.****: ***.  .* *****

AT4G38960.1     NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGRFLLLRQRIEFPGDK-------------
pp004666_Pp1s20 NAPAFFFCGVDGTSLCLQCDMDVHVGGKKAHERYLMMGQRVELPSRKLRFEDNVDTEKLP
                ******:* :**:******** ******::* *:*:: **:*:*. *             

AT4G38960.1     ------------------------------------------PKENNTRDNLQNQRVSTN
pp004666_Pp1s20 AEPSNAPTDKNGVLPDHHHHHHYHHHHHHHHHEDEVRAGLPAPKQSCDRDASNAPAIAIT
                                                          **:.  **  :   :: .

AT4G38960.1     GNGEANGKIDD-------EMIDLNANPQRVHEPSSNNNGIDVNNENNHEPAGLVPVGPFK
pp004666_Pp1s20 AGDEESLLIDGCIHQNQPRMIDLNSRPKRLQSQAS------------------VP-----
                ...* .  **.       .*****:.*:*::. :*                  **     

AT4G38960.1     RESEK-
pp004666_Pp1s20 ---DKG
                   :*
BoxShade v3.31 C (beta, 970507) Output
AT4G38960.1     M R I L C D A C E N A A A I I F C A A D E A A L C R P C D E K V H M C N K L A S R H V R V G L A E P S N A P C C D I C E
pp004666_Pp1s20    M R T L C D V C E A A P A R L F C A A D E A A L C L K C D E K V H S C N K L A N R H V R L E L A E S R A V P R C D I C E
 
AT4G38960.1     N A P A F F Y C E I D G S S L C L Q C D M V V H V G G K R T H G R F L L L R Q R I E F P G D K - - - - - - - - - - - - -
pp004666_Pp1s20    N A P A F F F C G V D G T S L C L Q C D M D V H V G G K K A H E R Y L M M G Q R V E L P S R K L R F E D N V D T E K L P
 
AT4G38960.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - P K E N N T R D N L Q N Q R V S T N
pp004666_Pp1s20    A E P S N A P T D K N G V L P D H H H H H H Y H H H H H H H H H E D E V R A G L P A P K Q S C D R D A S N A P A I A I T
 
AT4G38960.1     G N G E A N G K I D D - - - - - - - E M I D L N A N P Q R V H E P S S N N N G I D V N N E N N H E P A G L V P V G P F K
pp004666_Pp1s20    A G D E E S L L I D G C I H Q N Q P R M I D L N S R P K R L Q S Q A S - - - - - - - - - - - - - - - - - - V P - - - - -
 
AT4G38960.1     R E S E K -
pp004666_Pp1s20    - - - D K G
 
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