fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G38960.1 IDDEMIDLNANPQRVHE at 138/183 in AT4G38960.1
IDDEMIDLNANPQRVHE at 105/150 in AT4G38960.2
IDDEMIDLNANPQRVHE at 181/226 in AT4G38960.3
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt018983 MDNKLIDLNARPQRVHG in 166/203 AT4G38960.1 not_1st 0.663551401 II
Pt037453 VDKKMIDLNMKPQRTDH in 165/185 AT4G38960.1 not_1st 0.595015576 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT4G38960.1     MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICE
pt018983_POPTR_ MRMLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLADPSDVPQCDICE
pt037453_POPTR_ MRTLCDACESAAAIVFCAADEAALCLACDEKVHMCNKLASRHVRVGLANPSDVPRCDICE
                ** ***.**.****:********** .*********************:**:.* *****

AT4G38960.1     NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGRFLLLRQRIEFPGDKP-----------K
pt018983_POPTR_ KAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGRYLLLRQRVEFPGDKPGCTEEQGQQPLD
pt037453_POPTR_ NAPAFFYCETDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKP-QPDDLHSQPMH
                :******** *********** ***********:******:*******           .

AT4G38960.1     ENNT------------RDNLQNQRVS----TNGNGEANGKIDDEMIDLNANPQRV-HEPS
pt018983_POPTR_ DNETRRDQNQPPKLTARENQQNHRASPVPMVENNTDSDGKMDNKLIDLNARPQRV-H---
pt037453_POPTR_ PGETRKGQNQPPKATAEEKRQNRQVSPAPMSLSNSDGHDKVDKKMIDLNMKPQRTDHEQA
                 .:*            .:: **::.*      .* :...*:*.::**** .***. *   

AT4G38960.1     SNNNGIDVNNENNHEPAGLVPVGPFKRESEK
pt018983_POPTR_ ----GKNPTNQENHESSSLAPFGFFKGEPQK
pt037453_POPTR_ S----------NNQEL---------------
                           :*:*
BoxShade v3.31 C (beta, 970507) Output
AT4G38960.1     M R I L C D A C E N A A A I I F C A A D E A A L C R P C D E K V H M C N K L A S R H V R V G L A E P S N A P C C D I C E
pt018983_POPTR_    M R M L C D V C E S A A A I L F C A A D E A A L C R S C D E K V H M C N K L A S R H V R V G L A D P S D V P Q C D I C E
pt037453_POPTR_    M R T L C D A C E S A A A I V F C A A D E A A L C L A C D E K V H M C N K L A S R H V R V G L A N P S D V P R C D I C E
 
AT4G38960.1     N A P A F F Y C E I D G S S L C L Q C D M V V H V G G K R T H G R F L L L R Q R I E F P G D K P - - - - - - - - - - - K
pt018983_POPTR_    K A P A F F Y C E I D G S S L C L Q C D M I V H V G G K R T H G R Y L L L R Q R V E F P G D K P G C T E E Q G Q Q P L D
pt037453_POPTR_    N A P A F F Y C E T D G S S L C L Q C D M T V H V G G K R T H G R Y L L L R Q R V E F P G D K P - Q P D D L H S Q P M H
 
AT4G38960.1     E N N T - - - - - - - - - - - - R D N L Q N Q R V S - - - - T N G N G E A N G K I D D E M I D L N A N P Q R V - H E P S
pt018983_POPTR_    D N E T R R D Q N Q P P K L T A R E N Q Q N H R A S P V P M V E N N T D S D G K M D N K L I D L N A R P Q R V - H - - -
pt037453_POPTR_    P G E T R K G Q N Q P P K A T A E E K R Q N R Q V S P A P M S L S N S D G H D K V D K K M I D L N M K P Q R T D H E Q A
 
AT4G38960.1     S N N N G I D V N N E N N H E P A G L V P V G P F K R E S E K
pt018983_POPTR_    - - - - G K N P T N Q E N H E S S S L A P F G F F K G E P Q K
pt037453_POPTR_    S - - - - - - - - - - N N Q E L - - - - - - - - - - - - - - -
 
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