fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT4G38960.1 IDDEMIDLNANPQRVHE at 138/183 in AT4G38960.1
IDDEMIDLNANPQRVHE at 105/150 in AT4G38960.2
IDDEMIDLNANPQRVHE at 181/226 in AT4G38960.3
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt000227 VDKNMIDLNMKPHRIHE in 165/184 AT2G21320.1 not_not 0.579439252 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT4G38960.1     MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICE
pt000227_POPTR_ MRTLCDACESAFAIVFCAADEAALCLACDKKVHMCNKLASRHVRVGLANPSEVPRCDICE
                ** ******.* **:********** .**:******************:**:.* *****

AT4G38960.1     NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGRFLLLRQRIEFPGDKPKENN--------
pt000227_POPTR_ NAPAFFYCETDGSSLCLQCDMTVHVGGKRTHGRYLLLRQKIEFPGNQPQPEDPAPQPMYP
                ********* ***********.***********:*****:*****::*: ::        

AT4G38960.1     --TR------------DNLQNQRVS------TNGNGEANGKIDDEMIDLNANPQRVHEPS
pt000227_POPTR_ GETRRGQNRPQKATSGENRQNRQASPVLMSVTNSDG--HDKVDKNMIDLNMKPHRIHEHA
                  **            :* **::.*      **.:*  :.*:*.:***** :*:*:** :

AT4G38960.1     SNNNGIDVNNENNHEPAGLVPVGPFKRESEK
pt000227_POPTR_ SNNQ-------------------------EQ
                ***:                         *:
BoxShade v3.31 C (beta, 970507) Output
AT4G38960.1     M R I L C D A C E N A A A I I F C A A D E A A L C R P C D E K V H M C N K L A S R H V R V G L A E P S N A P C C D I C E
pt000227_POPTR_    M R T L C D A C E S A F A I V F C A A D E A A L C L A C D K K V H M C N K L A S R H V R V G L A N P S E V P R C D I C E
 
AT4G38960.1     N A P A F F Y C E I D G S S L C L Q C D M V V H V G G K R T H G R F L L L R Q R I E F P G D K P K E N N - - - - - - - -
pt000227_POPTR_    N A P A F F Y C E T D G S S L C L Q C D M T V H V G G K R T H G R Y L L L R Q K I E F P G N Q P Q P E D P A P Q P M Y P
 
AT4G38960.1     - - T R - - - - - - - - - - - - D N L Q N Q R V S - - - - - - T N G N G E A N G K I D D E M I D L N A N P Q R V H E P S
pt000227_POPTR_    G E T R R G Q N R P Q K A T S G E N R Q N R Q A S P V L M S V T N S D G - - H D K V D K N M I D L N M K P H R I H E H A
 
AT4G38960.1     S N N N G I D V N N E N N H E P A G L V P V G P F K R E S E K
pt000227_POPTR_    S N N Q - - - - - - - - - - - - - - - - - - - - - - - - - E Q
 
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